Orthogroup:group_1224


Homologs in group_1224

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07135 FBDBKF_07135 Morganella morganii S1 focA formate transporter FocA
EHELCC_03835 EHELCC_03835 Morganella morganii S2 focA formate transporter FocA
NLDBIP_03835 NLDBIP_03835 Morganella morganii S4 focA formate transporter FocA
LHKJJB_09665 LHKJJB_09665 Morganella morganii S3 focA formate transporter FocA
HKOGLL_09310 HKOGLL_09310 Morganella morganii S5 focA formate transporter FocA
F4V73_RS01320 F4V73_RS01320 Morganella psychrotolerans focA formate transporter FocA
PMI_RS03475 PMI_RS03475 Proteus mirabilis HI4320 focA formate transporter FocA

Distribution of group_1224 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1224 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1224

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1224.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 focA 7

Product

# Product Occurence
1 formate transporter FocA 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2116 7 P Inorganic ion transport and metabolism (P) Formate/nitrite transporter FocA, FNT family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K06212 7 formate transporter - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01226 7 Formate/nitrite transporter

Annotations of the 13 SwissProt hits

Annotation Number of occurrences
Formate channel FocA 4
Formate channel FocB 1
Nitrite transporter NirC 3
Probable formate transporter 2
Uncharacterized transporter YHL008C 1
Uncharacterized transporter YrhG 1
Uncharacterized transporter YwcJ 1

Protein length

Min length 284
Max length 286
Mean length (sd) 285.7 (0.8)
Median length 286.0

Protein length distribution