Orthogroup:group_1224


Homologs in group_1224

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06680 FBDBKF_06680 Morganella morganii S1 dppC ABC-type dipeptide/oligopeptide/nickel transport system, permease component
EHELCC_09725 EHELCC_09725 Morganella morganii S2 dppC ABC-type dipeptide/oligopeptide/nickel transport system, permease component
NLDBIP_10105 NLDBIP_10105 Morganella morganii S4 dppC ABC-type dipeptide/oligopeptide/nickel transport system, permease component
LHKJJB_07650 LHKJJB_07650 Morganella morganii S3 dppC ABC-type dipeptide/oligopeptide/nickel transport system, permease component
HKOGLL_07200 HKOGLL_07200 Morganella morganii S5 dppC ABC-type dipeptide/oligopeptide/nickel transport system, permease component
F4V73_RS15260 F4V73_RS15260 Morganella psychrotolerans - ABC transporter permease
PMI_RS12430 PMI_RS12430 Proteus mirabilis HI4320 - ABC transporter permease

Distribution of group_1224 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1224 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1224

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1224.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 dppC 5
2 - 2

Product

# Product Occurence
1 ABC-type dipeptide/oligopeptide/nickel transport system, permease component 5
2 ABC transporter permease 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1173 7 EP Amino acid transport and metabolism (E)
Inorganic ion transport and metabolism (P)		 ABC-type dipeptide/oligopeptide/nickel transport system, permease component

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00528 7 Binding-protein-dependent transport system inner membrane component

Annotations of the 71 SwissProt hits

Annotation Number of occurrences
Di/tripeptide transport system permease protein DppC 1
Dipeptide transport system permease protein DppC 7
Glutathione transport system permease protein GsiD 16
Inner membrane ABC transporter permease protein YejE 1
Metal-staphylopine import system permease protein CntC 2
Nickel import system permease protein NikC 9
Nickel transport system permease protein NikC 2
Oligopeptide transport system permease protein AmiD 2
Oligopeptide transport system permease protein AppC 1
Oligopeptide transport system permease protein OppC 9
Peptide transport system permease protein SapC 5
Peptidoglycan transport system permease protein YejE 1
Probable D,D-dipeptide transport system permease protein DdpC 1
Probable peptide ABC transporter permease protein y4tQ 1
Putative peptide permease protein BAB2_0815 1
Putative peptide permease protein BMEII0861 1
Putative peptide permease protein BOV_A0350 1
Putative peptide permease protein BRA0407/BS1330_II0404 1
Putative peptide permease protein BruAb2_0794 1
Putative peptide transport permease protein MT1319 1
Putative peptide transport permease protein Mb1313c 1
Putative peptide transport permease protein Rv1282c 1
Putative peptide transport system permease protein BAB2_1051 1
Putative peptide transport system permease protein BMEII0207/BMEII0208 1
Putative peptide transport system permease protein BRA1093/BS1330_II1085 1
Putative peptide transport system permease protein BruAb2_1032 1
Putrescine export system permease protein SapC 1

Protein length

Min length 268
Max length 270
Mean length (sd) 268.3 (0.8)
Median length 268.0

Protein length distribution