COG0582


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0582, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 32 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Integrase/recombinase, includes phage integrase
Function(s) descr. Replication, recombination and repair (L)
Mobilome: prophages, transposons (X)

Occurence in the database

COG0582 is associated with 32 different proteins (see tab "Protein list" and "Profile")
The 32 proteins are classified into 5 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_50 FBDBKF_08880 157601 158854 1 fimB Integrase/recombinase, includes phage integrase Morganella morganii S1
1 group_2906 FBDBKF_13295 37004 38227 -1 Integrase-like protein Morganella morganii S1
2 group_50 FBDBKF_14415 83204 84466 1 Integrase arm-type DNA-binding domain-containing protein Morganella morganii S1
3 group_3449 FBDBKF_14975 8601 8873 -1 Prophage CPS-53 integrase Morganella morganii S1
4 group_2987 FBDBKF_17095 1760 2962 -1 Integrase Morganella morganii S1
5 group_50 FBDBKF_19690 1959 3236 -1 Integrase Morganella morganii S1
6 group_2987 EHELCC_01795 352539 353741 1 Integrase Morganella morganii S2
7 group_50 EHELCC_07865 32519 33781 -1 Integrase arm-type DNA-binding domain-containing protein Morganella morganii S2
8 group_2906 EHELCC_08800 236964 238187 1 Integrase-like protein Morganella morganii S2
9 group_3449 EHELCC_11270 76033 76305 1 Prophage CPS-53 integrase Morganella morganii S2
10 group_50 EHELCC_12645 4871 6124 -1 fimB Integrase/recombinase, includes phage integrase Morganella morganii S2
11 group_2987 NLDBIP_01665 326395 327597 -1 Integrase Morganella morganii S4
12 group_50 NLDBIP_08190 32519 33781 -1 Integrase arm-type DNA-binding domain-containing protein Morganella morganii S4
13 group_2906 NLDBIP_09125 236964 238187 1 Integrase-like protein Morganella morganii S4
14 group_3449 NLDBIP_11615 76033 76305 1 Prophage CPS-53 integrase Morganella morganii S4
15 group_50 NLDBIP_12985 4871 6124 -1 fimB Integrase/recombinase, includes phage integrase Morganella morganii S4
16 group_2987 LHKJJB_00370 65088 66290 1 Integrase Morganella morganii S3
17 group_2906 LHKJJB_05140 18972 20195 -1 Integrase-like protein Morganella morganii S3
18 group_50 LHKJJB_06075 223378 224640 1 Integrase arm-type DNA-binding domain-containing protein Morganella morganii S3
19 group_3449 LHKJJB_11475 76033 76305 1 Prophage CPS-53 integrase Morganella morganii S3
20 group_50 LHKJJB_13570 156319 157572 1 fimB Integrase/recombinase, includes phage integrase Morganella morganii S3
21 group_2987 HKOGLL_00410 70599 71801 1 Integrase Morganella morganii S5
22 group_50 HKOGLL_04840 17110 18372 -1 Integrase arm-type DNA-binding domain-containing protein Morganella morganii S5
23 group_2906 HKOGLL_05775 221555 222778 1 Integrase-like protein Morganella morganii S5
24 group_3449 HKOGLL_10085 76033 76305 1 Prophage CPS-53 integrase Morganella morganii S5
25 group_50 HKOGLL_11460 4871 6124 -1 fimB Integrase/recombinase, includes phage integrase Morganella morganii S5
26 group_3810 F4V73_RS02010 435803 437203 1 recombinase Morganella psychrotolerans
27 group_50 F4V73_RS02510 530175 531356 -1 tyrosine-type recombinase/integrase Morganella psychrotolerans
28 group_50 F4V73_RS10095 127299 128558 1 tyrosine-type recombinase/integrase Morganella psychrotolerans
29 group_2987 F4V73_RS18035 52254 53363 -1 site-specific integrase Morganella psychrotolerans
30 group_2906 PMI_RS12305 2728678 2729919 1 integrase family protein Proteus mirabilis HI4320
31 group_50 PMI_RS17290 3798109 3799374 1 integrase arm-type DNA-binding domain-containing protein Proteus mirabilis HI4320