Homologs in group_198

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7 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS10280 F4V73_RS10280 15.2 Morganella psychrotolerans - fimbrial protein
PMI_RS10890 PMI_RS10890 28.7 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS10895 PMI_RS10895 28.6 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS10910 PMI_RS10910 22.7 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS12555 PMI_RS12555 20.1 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS16670 PMI_RS16670 23.6 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS17140 PMI_RS17140 20.6 Proteus mirabilis HI4320 - fimbrial protein

Distribution of the homologs in the orthogroup group_198

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_198

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8X5K5 7.97e-11 61 29 8 190 2 lpfA Probable major fimbrial subunit LpfA Escherichia coli O157:H7
P22595 3.13e-06 48 28 5 164 3 fimA Type-1 fimbrial protein subunit Serratia marcescens
P43660 5.66e-06 48 26 8 190 3 lpfA Long polar fimbria protein A Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P62605 1.05e-05 47 23 5 190 3 pilC Type-1 fimbrial protein, C chain Escherichia coli
P62606 1.05e-05 47 23 5 190 3 pilC Type-1 fimbrial protein, C chain Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8X5L0 0.000175 43 23 3 151 2 lpfE Probable fimbrial subunit LpfE Escherichia coli O157:H7
P43664 0.000216 43 22 5 187 3 lpfE Protein LpfE Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS05775
Feature type CDS
Gene -
Product fimbrial protein
Location 1261147 - 1261713 (strand: -1)
Length 567 (nucleotides) / 188 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_198
Orthogroup size 8
N. genomes 2

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Genomic region

Domains

PF00419 Fimbrial protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3539 Cell motility (N) N Pilin (type 1 fimbrial protein)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07345 major type 1 subunit fimbrin (pilin) Shigellosis
Pertussis		 -

Protein Sequence

MKIKNHIRLLSALLVISSSMNVLADNSKTTEKKNNNIINFSGTVISTSCNIDSPSSPITLPTINKSEIVLDKDWANAKSSTGSNFEIKLLDCGNNNATLTFNGTDLAGENKIMKNKSITNNSAKGVGIFIRSDEGNKNIIHLNGNQAITKRIENKTATYKFHANYASYLPNPTSGTVNTSVNFTVKYS

Flanking regions ( +/- flanking 50bp)

AAATAGGATAAACCTATTGCGTTATCAAATTATTTATTAAAGGAAAAACGATGAAAATAAAAAATCATATCAGATTACTATCTGCATTATTAGTTATCTCTTCTAGCATGAATGTATTAGCAGATAATAGCAAAACAACAGAAAAGAAAAATAACAATATTATTAATTTTAGTGGAACAGTAATATCAACATCCTGCAATATAGATAGCCCTAGTTCTCCTATCACTTTGCCTACAATTAATAAATCGGAAATAGTCTTAGATAAAGATTGGGCCAATGCCAAAAGCAGTACAGGTAGTAATTTTGAAATTAAACTATTAGATTGTGGCAATAATAATGCAACATTAACATTTAACGGCACTGATTTAGCCGGTGAAAATAAAATTATGAAGAATAAAAGCATCACAAATAATAGCGCTAAAGGAGTAGGAATTTTCATTCGTAGTGATGAAGGTAATAAAAATATTATTCATTTAAATGGTAACCAAGCAATAACTAAGAGAATTGAAAATAAAACAGCAACTTATAAATTCCATGCCAATTACGCGAGTTATCTTCCAAATCCAACATCAGGAACTGTCAATACATCAGTAAATTTTACCGTTAAATATTCTTAATTAAAAAAAACACAGGATTATTTTATTATGAAGTATAATGTTTATATTTT