Homologs in group_198

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7 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS10280 F4V73_RS10280 19.4 Morganella psychrotolerans - fimbrial protein
PMI_RS05775 PMI_RS05775 28.6 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS10890 PMI_RS10890 30.1 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS10910 PMI_RS10910 22.6 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS12555 PMI_RS12555 19.7 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS16670 PMI_RS16670 26.8 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS17140 PMI_RS17140 31.9 Proteus mirabilis HI4320 - fimbrial protein

Distribution of the homologs in the orthogroup group_198

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_198

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P08190 2.29e-17 78 33 4 148 1 fimG Protein FimG Escherichia coli (strain K12)
P13430 6.85e-16 73 34 6 172 1 sfaS S-fimbrial adhesin protein SfaS Escherichia coli O6:K15:H31 (strain 536 / UPEC)
P77294 6.3e-15 71 28 4 174 3 ydeR Uncharacterized fimbrial-like protein YdeR Escherichia coli (strain K12)
P22595 1.92e-09 57 29 5 158 3 fimA Type-1 fimbrial protein subunit Serratia marcescens
P39264 2.39e-09 57 30 8 186 1 fimI Fimbrin-like protein FimI Escherichia coli (strain K12)
P75860 1.69e-08 54 31 6 169 2 ycbV Uncharacterized fimbrial-like protein YcbV Escherichia coli (strain K12)
P13429 4.81e-08 53 31 3 103 1 sfaG S-fimbrial protein subunit SfaG Escherichia coli O6:K15:H31 (strain 536 / UPEC)
P75859 8.54e-08 52 26 4 173 2 ycbU Uncharacterized fimbrial-like protein YcbU Escherichia coli (strain K12)
P08189 2.78e-07 51 28 6 177 1 fimF Protein FimF Escherichia coli (strain K12)
P77789 1.56e-06 49 27 7 181 3 ydeS Uncharacterized fimbrial-like protein YdeS Escherichia coli (strain K12)
Q8X5K5 2.31e-06 48 29 7 175 2 lpfA Probable major fimbrial subunit LpfA Escherichia coli O157:H7
P43660 4.13e-05 45 28 4 135 3 lpfA Long polar fimbria protein A Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P37926 4.92e-05 45 25 4 127 3 fimF Fimbrial-like protein FimF Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P43664 0.000111 43 29 5 123 3 lpfE Protein LpfE Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P37920 0.000112 44 27 5 154 3 fimA Type-1 fimbrial protein, A chain Salmonella typhi

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10895
Feature type CDS
Gene -
Product fimbrial protein
Location 2399176 - 2399697 (strand: -1)
Length 522 (nucleotides) / 173 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_198
Orthogroup size 8
N. genomes 2

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Genomic region

Domains

PF00419 Fimbrial protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3539 Cell motility (N) N Pilin (type 1 fimbrial protein)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07349 minor fimbrial subunit - -

Protein Sequence

MIKVMRLFLLITTIGISFFSSAGSTVTLQFSGNIKAATCNVSGSKNINIDLKQMPESLFNKVNSSSVWNDFNIKLIDCSPGVNQVKLTFSGTPDNADVNNLYKNEGTAKNIAVQLQNKNSNGEIPLGNGKNLYIAVNGKPSVTVPLRTRAFSKLGNATPGTVSAKITATLIYQ

Flanking regions ( +/- flanking 50bp)

ACATGGTTATTTTTATAGCTATTGATGTTTGCTACCTGTAGGAAAGTAAAATGATAAAAGTAATGAGGCTCTTCCTTCTTATAACTACTATTGGAATAAGTTTTTTTTCATCTGCAGGAAGTACTGTGACACTTCAATTTTCTGGAAATATAAAAGCCGCGACTTGTAATGTTTCTGGTAGTAAAAATATTAATATTGATTTGAAACAGATGCCAGAAAGTTTATTTAATAAAGTAAACTCTAGTTCTGTTTGGAATGATTTTAATATTAAGTTAATAGATTGTTCTCCGGGGGTAAATCAAGTAAAGCTGACTTTTTCTGGAACTCCTGATAATGCAGATGTGAATAATTTATATAAAAATGAGGGGACGGCAAAAAATATTGCCGTTCAATTACAAAATAAAAACAGTAATGGCGAAATTCCATTAGGTAATGGAAAAAATTTATATATCGCGGTTAATGGTAAACCATCGGTTACTGTTCCACTAAGAACACGAGCATTTAGTAAATTAGGTAATGCAACACCGGGGACGGTGTCCGCCAAAATAACAGCAACGCTTATTTATCAATAAAAAGAGGGTGTTATGTGGAAATCACTAACGTTATTTTTATTATTTTCATA