Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13356, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 30 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link | PF13356 |
---|---|
Description | Arm DNA-binding domain |
Occurence in the database
PF13356 is associated with 30 different proteins (see tab "Protein list" and "Profile") |
The 30 proteins are classified into 4 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_50 | FBDBKF_08880 | 157601 | 158854 | 1 | fimB | Integrase/recombinase, includes phage integrase | Morganella morganii S1 |
1 | group_2906 | FBDBKF_13295 | 37004 | 38227 | -1 | Integrase-like protein | Morganella morganii S1 | |
2 | group_50 | FBDBKF_14415 | 83204 | 84466 | 1 | Integrase arm-type DNA-binding domain-containing protein | Morganella morganii S1 | |
3 | group_3449 | FBDBKF_14975 | 8601 | 8873 | -1 | Prophage CPS-53 integrase | Morganella morganii S1 | |
4 | group_2987 | FBDBKF_17095 | 1760 | 2962 | -1 | Integrase | Morganella morganii S1 | |
5 | group_50 | FBDBKF_19690 | 1959 | 3236 | -1 | Integrase | Morganella morganii S1 | |
6 | group_2987 | EHELCC_01795 | 352539 | 353741 | 1 | Integrase | Morganella morganii S2 | |
7 | group_50 | EHELCC_07865 | 32519 | 33781 | -1 | Integrase arm-type DNA-binding domain-containing protein | Morganella morganii S2 | |
8 | group_2906 | EHELCC_08800 | 236964 | 238187 | 1 | Integrase-like protein | Morganella morganii S2 | |
9 | group_3449 | EHELCC_11270 | 76033 | 76305 | 1 | Prophage CPS-53 integrase | Morganella morganii S2 | |
10 | group_50 | EHELCC_12645 | 4871 | 6124 | -1 | fimB | Integrase/recombinase, includes phage integrase | Morganella morganii S2 |
11 | group_2987 | NLDBIP_01665 | 326395 | 327597 | -1 | Integrase | Morganella morganii S4 | |
12 | group_50 | NLDBIP_08190 | 32519 | 33781 | -1 | Integrase arm-type DNA-binding domain-containing protein | Morganella morganii S4 | |
13 | group_2906 | NLDBIP_09125 | 236964 | 238187 | 1 | Integrase-like protein | Morganella morganii S4 | |
14 | group_3449 | NLDBIP_11615 | 76033 | 76305 | 1 | Prophage CPS-53 integrase | Morganella morganii S4 | |
15 | group_50 | NLDBIP_12985 | 4871 | 6124 | -1 | fimB | Integrase/recombinase, includes phage integrase | Morganella morganii S4 |
16 | group_2987 | LHKJJB_00370 | 65088 | 66290 | 1 | Integrase | Morganella morganii S3 | |
17 | group_2906 | LHKJJB_05140 | 18972 | 20195 | -1 | Integrase-like protein | Morganella morganii S3 | |
18 | group_50 | LHKJJB_06075 | 223378 | 224640 | 1 | Integrase arm-type DNA-binding domain-containing protein | Morganella morganii S3 | |
19 | group_3449 | LHKJJB_11475 | 76033 | 76305 | 1 | Prophage CPS-53 integrase | Morganella morganii S3 | |
20 | group_50 | LHKJJB_13570 | 156319 | 157572 | 1 | fimB | Integrase/recombinase, includes phage integrase | Morganella morganii S3 |
21 | group_2987 | HKOGLL_00410 | 70599 | 71801 | 1 | Integrase | Morganella morganii S5 | |
22 | group_50 | HKOGLL_04840 | 17110 | 18372 | -1 | Integrase arm-type DNA-binding domain-containing protein | Morganella morganii S5 | |
23 | group_2906 | HKOGLL_05775 | 221555 | 222778 | 1 | Integrase-like protein | Morganella morganii S5 | |
24 | group_3449 | HKOGLL_10085 | 76033 | 76305 | 1 | Prophage CPS-53 integrase | Morganella morganii S5 | |
25 | group_50 | HKOGLL_11460 | 4871 | 6124 | -1 | fimB | Integrase/recombinase, includes phage integrase | Morganella morganii S5 |
26 | group_50 | F4V73_RS02510 | 530175 | 531356 | -1 | tyrosine-type recombinase/integrase | Morganella psychrotolerans | |
27 | group_50 | F4V73_RS10095 | 127299 | 128558 | 1 | tyrosine-type recombinase/integrase | Morganella psychrotolerans | |
28 | group_2906 | PMI_RS12305 | 2728678 | 2729919 | 1 | integrase family protein | Proteus mirabilis HI4320 | |
29 | group_50 | PMI_RS17290 | 3798109 | 3799374 | 1 | integrase arm-type DNA-binding domain-containing protein | Proteus mirabilis HI4320 |