PF12848

Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12848, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 28 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12848
Description ABC transporter

Occurence in the database

PF12848 is associated with 28 different proteins (see tab "Protein list" and "Profile")
The 28 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_685 FBDBKF_02640 225421 227004 1 uup ABC-F family ATPase Morganella morganii S1
1 group_1150 FBDBKF_06590 157981 159627 1 ettA energy-dependent translational throttle protein EttA Morganella morganii S1
2 group_1254 FBDBKF_07300 142959 144878 1 uup ABC transporter ATP-binding protein Morganella morganii S1
3 group_1693 FBDBKF_11800 10433 12361 1 uup ABC transporter ATP-binding protein Morganella morganii S1
4 group_685 EHELCC_03110 613241 614824 1 uup ABC-F family ATPase Morganella morganii S2
5 group_1254 EHELCC_03670 41308 43227 -1 uup ABC transporter ATP-binding protein Morganella morganii S2
6 group_1150 EHELCC_09635 158553 160199 1 ettA energy-dependent translational throttle protein EttA Morganella morganii S2
7 group_1693 EHELCC_14505 122344 124272 -1 uup ABC transporter ATP-binding protein Morganella morganii S2
8 group_685 NLDBIP_00350 65312 66895 -1 uup ABC-F family ATPase Morganella morganii S4
9 group_1254 NLDBIP_03670 41104 43023 -1 uup ABC transporter ATP-binding protein Morganella morganii S4
10 group_1150 NLDBIP_10015 158553 160199 1 ettA energy-dependent translational throttle protein EttA Morganella morganii S4
11 group_1693 NLDBIP_15600 126281 128209 -1 uup ABC transporter ATP-binding protein Morganella morganii S4
12 group_685 LHKJJB_01685 325790 327373 1 uup ABC-F family ATPase Morganella morganii S3
13 group_1150 LHKJJB_07740 57039 58685 -1 ettA energy-dependent translational throttle protein EttA Morganella morganii S3
14 group_1254 LHKJJB_09500 41218 43137 -1 uup ABC transporter ATP-binding protein Morganella morganii S3
15 group_1693 LHKJJB_15010 10433 12361 1 uup ABC transporter ATP-binding protein Morganella morganii S3
16 group_685 HKOGLL_01725 331301 332884 1 uup ABC-F family ATPase Morganella morganii S5
17 group_1150 HKOGLL_07290 57039 58685 -1 ettA energy-dependent translational throttle protein EttA Morganella morganii S5
18 group_1254 HKOGLL_09475 147915 149834 1 uup ABC transporter ATP-binding protein Morganella morganii S5
19 group_1693 HKOGLL_19275 990 2918 -1 uup ABC transporter ATP-binding protein Morganella morganii S5
20 group_1254 F4V73_RS01485 331381 333297 1 ABC transporter ATP-binding protein Morganella psychrotolerans
21 group_685 F4V73_RS05095 1085545 1087152 1 ABC-F family ATPase Morganella psychrotolerans
22 group_1693 F4V73_RS14855 205854 207785 -1 ABC transporter ATP-binding protein Morganella psychrotolerans
23 group_1150 F4V73_RS15355 55718 57385 -1 ettA energy-dependent translational throttle protein EttA Morganella psychrotolerans
24 group_1254 PMI_RS03810 862999 864930 1 ABC transporter ATP-binding protein Proteus mirabilis HI4320
25 group_685 PMI_RS06070 1330564 1332162 -1 ABC-F family ATPase Proteus mirabilis HI4320
26 group_1693 PMI_RS13865 3078650 3080581 1 ABC transporter ATP-binding protein Proteus mirabilis HI4320
27 group_1150 PMI_RS18470 4054931 4056598 -1 ettA energy-dependent translational throttle protein EttA Proteus mirabilis HI4320