PF07729


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF07729, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 23 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF07729
Description FCD domain

Occurence in the database

PF07729 is associated with 23 different proteins (see tab "Protein list" and "Profile")
The 23 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_150 FBDBKF_04245 37329 38093 -1 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR Morganella morganii S1
1 group_2840 FBDBKF_10540 67043 67816 -1 fadR DNA-binding transcriptional regulator, FadR family Morganella morganii S1
2 group_2053 FBDBKF_15380 1078 1764 1 fadR DNA-binding transcriptional regulator, FadR family Morganella morganii S1
3 group_150 EHELCC_05535 96786 97550 -1 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR Morganella morganii S2
4 group_2840 EHELCC_14875 67033 67806 -1 fadR DNA-binding transcriptional regulator, FadR family Morganella morganii S2
5 group_2053 EHELCC_15740 378 1064 1 fadR DNA-binding transcriptional regulator, FadR family Morganella morganii S2
6 group_150 NLDBIP_05855 137851 138615 -1 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR Morganella morganii S4
7 group_2840 NLDBIP_14705 67033 67806 -1 fadR DNA-binding transcriptional regulator, FadR family Morganella morganii S4
8 group_2053 NLDBIP_16630 79599 80285 -1 fadR DNA-binding transcriptional regulator, FadR family Morganella morganii S4
9 group_150 LHKJJB_02735 115375 116139 -1 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR Morganella morganii S3
10 group_2840 LHKJJB_14640 73932 74693 1 fadR DNA-binding transcriptional regulator, FadR family Morganella morganii S3
11 group_2053 LHKJJB_16175 378 1064 1 fadR DNA-binding transcriptional regulator, FadR family Morganella morganii S3
12 group_150 HKOGLL_06210 37239 38003 -1 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR Morganella morganii S5
13 group_2840 HKOGLL_13260 73932 74693 1 fadR DNA-binding transcriptional regulator, FadR family Morganella morganii S5
14 group_2053 HKOGLL_15945 378 1064 1 fadR DNA-binding transcriptional regulator, FadR family Morganella morganii S5
15 group_150 F4V73_RS08690 1798377 1799141 -1 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR Morganella psychrotolerans
16 group_2840 F4V73_RS14250 69385 70149 -1 FCD domain-containing protein Morganella psychrotolerans
17 group_2053 F4V73_RS17765 195389 196075 -1 FadR/GntR family transcriptional regulator Morganella psychrotolerans
18 group_150 PMI_RS01990 469587 470237 -1 GntR family transcriptional regulator Proteus mirabilis HI4320
19 group_150 PMI_RS05125 1119084 1119797 -1 FadR/GntR family transcriptional regulator Proteus mirabilis HI4320
20 group_150 PMI_RS10090 2205495 2206265 -1 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR Proteus mirabilis HI4320
21 group_2053 PMI_RS15090 3349328 3350014 1 FadR/GntR family transcriptional regulator Proteus mirabilis HI4320
22 group_150 PMI_RS17685 3882343 3883002 -1 GntR family transcriptional regulator Proteus mirabilis HI4320