PF05638


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF05638, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 33 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF05638
Description Type VI secretion system effector, Hcp

Occurence in the database

PF05638 is associated with 33 different proteins (see tab "Protein list" and "Profile")
The 33 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_29 FBDBKF_01365 268855 269334 1 Type VI secretion system tube protein Hcp Morganella morganii S1
1 group_29 FBDBKF_01535 307831 308310 1 Hcp family type VI secretion system effector Morganella morganii S1
2 group_168 FBDBKF_16725 26941 27459 -1 hcp Type VI protein secretion system component Hcp (secreted cytotoxin) Morganella morganii S1
3 group_3512 FBDBKF_18025 4562 5041 1 Hcp family type VI secretion system effector Morganella morganii S1
4 group_29 EHELCC_00010 558 1037 -1 Hcp family type VI secretion system effector Morganella morganii S2
5 group_29 EHELCC_00180 39534 40013 -1 Type VI secretion system tube protein Hcp Morganella morganii S2
6 group_168 EHELCC_10735 186312 186830 1 hcp Type VI protein secretion system component Hcp (secreted cytotoxin) Morganella morganii S2
7 group_3512 EHELCC_16725 4562 5041 1 Hcp family type VI secretion system effector Morganella morganii S2
8 group_29 NLDBIP_03280 640123 640602 1 Type VI secretion system tube protein Hcp Morganella morganii S4
9 group_29 NLDBIP_03450 679099 679578 1 Hcp family type VI secretion system effector Morganella morganii S4
10 group_168 NLDBIP_11080 164583 165101 1 hcp Type VI protein secretion system component Hcp (secreted cytotoxin) Morganella morganii S4
11 group_3512 NLDBIP_17725 50725 51204 -1 Hcp family type VI secretion system effector Morganella morganii S4
12 group_29 LHKJJB_04795 247364 247843 1 Type VI secretion system tube protein Hcp Morganella morganii S3
13 group_168 LHKJJB_10275 26427 26945 -1 hcp Type VI protein secretion system component Hcp (secreted cytotoxin) Morganella morganii S3
14 group_3512 LHKJJB_17645 50725 51204 -1 Hcp family type VI secretion system effector Morganella morganii S3
15 group_29 LHKJJB_19860 335 814 1 Hcp family type VI secretion system effector Morganella morganii S3
16 group_29 HKOGLL_02080 763 1242 -1 Hcp family type VI secretion system effector Morganella morganii S5
17 group_29 HKOGLL_02250 39739 40218 -1 Type VI secretion system tube protein Hcp Morganella morganii S5
18 group_168 HKOGLL_16440 26436 26954 -1 hcp Type VI protein secretion system component Hcp (secreted cytotoxin) Morganella morganii S5
19 group_3512 HKOGLL_17460 50725 51204 -1 Hcp family type VI secretion system effector Morganella morganii S5
20 group_3720 F4V73_RS00085 22000 22518 -1 Hcp family type VI secretion system effector Morganella psychrotolerans
21 group_168 F4V73_RS05140 1097166 1097684 -1 Hcp family type VI secretion system effector Morganella psychrotolerans
22 group_3720 F4V73_RS07030 1460007 1460525 -1 type VI secretion system tube protein Hcp Morganella psychrotolerans
23 group_3720 F4V73_RS09355 1968826 1969311 -1 Hcp family type VI secretion system effector Morganella psychrotolerans
24 group_29 F4V73_RS16845 197547 198038 -1 Hcp family type VI secretion system effector Morganella psychrotolerans
25 group_29 F4V73_RS17415 114260 114739 -1 Hcp family type VI secretion system effector Morganella psychrotolerans
26 group_29 F4V73_RS18725 13478 13957 1 Hcp family type VI secretion system effector Morganella psychrotolerans
27 group_168 PMI_RS00995 245183 245701 1 Hcp family type VI secretion system effector Proteus mirabilis HI4320
28 group_29 PMI_RS03605 807789 808262 -1 Hcp family type VI secretion system effector Proteus mirabilis HI4320
29 group_168 PMI_RS03690 831710 832228 1 Hcp family type VI secretion system effector Proteus mirabilis HI4320
30 group_168 PMI_RS05420 1185979 1186497 1 Hcp family type VI secretion system effector Proteus mirabilis HI4320
31 group_29 PMI_RS13890 3086170 3086649 -1 Hcp family type VI secretion system effector Proteus mirabilis HI4320
32 group_168 PMI_RS14785 3278930 3279448 1 Hcp family type VI secretion system effector Proteus mirabilis HI4320