Homologs in group_2487

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01365 FBDBKF_01365 53.5 Morganella morganii S1 - Type VI secretion system tube protein Hcp
EHELCC_00180 EHELCC_00180 53.5 Morganella morganii S2 - Type VI secretion system tube protein Hcp
NLDBIP_03280 NLDBIP_03280 53.5 Morganella morganii S4 - Type VI secretion system tube protein Hcp
LHKJJB_04795 LHKJJB_04795 53.5 Morganella morganii S3 - Type VI secretion system tube protein Hcp
HKOGLL_02250 HKOGLL_02250 53.5 Morganella morganii S5 - Type VI secretion system tube protein Hcp

Distribution of the homologs in the orthogroup group_2487

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2487

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9HI36 4e-29 107 38 5 167 1 hcpA Major exported protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P46855 5.55e-26 104 39 3 152 3 yhhZ Uncharacterized protein YhhZ Escherichia coli (strain K12)
P80693 1.24e-08 52 44 0 47 1 None Major exported protein (Fragment) Pseudomonas syringae pv. ribicola

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS13890
Feature type CDS
Gene -
Product Hcp family type VI secretion system effector
Location 3086170 - 3086649 (strand: -1)
Length 480 (nucleotides) / 159 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2487
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF05638 Type VI secretion system effector, Hcp

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3157 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component Hcp (secreted cytotoxin)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06887 uncharacterized protein - -

Protein Sequence

MANIIYMTLTGEQQGLISKGCSTYDSIGNKYQKGHEDEILVLAIRHSISRAQNSHHHPFEIVKPIDKSSPLLGVAISNNELIDCKLEFFRTSQNGAQEKYYSISLQQATIKNITYDYPNSISHNDRQPEEIILLDYRDITWRHLAASTSGYSIREESIY

Flanking regions ( +/- flanking 50bp)

CTGACTTAAGTTATATATAAAATATTGAAAATATAAAATAGGAAAATCACATGGCTAACATTATATACATGACCCTAACTGGGGAACAACAAGGATTAATATCTAAAGGGTGTTCAACATATGATTCAATTGGAAATAAATACCAAAAAGGTCATGAGGATGAAATACTTGTATTAGCTATTAGACATTCGATATCTCGAGCCCAAAACTCTCATCATCATCCATTCGAAATAGTAAAACCCATCGATAAATCATCGCCACTGCTAGGTGTCGCCATATCTAATAATGAGTTAATAGATTGCAAACTAGAATTTTTTAGAACTAGTCAAAATGGCGCTCAAGAAAAGTACTACAGTATATCATTACAACAGGCCACCATAAAAAATATAACTTATGATTATCCTAATTCAATATCTCATAATGACAGACAACCGGAAGAAATCATATTGTTAGATTATAGAGATATCACATGGAGGCATTTAGCGGCATCCACATCAGGATATAGTATTAGAGAAGAAAGTATCTACTAAGTAGATGCTTTCTTCTCTAATAGATAAGGTTTTATATCATTTATAATGTC