Orthogroup:group_40


Homologs in group_40

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13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01535 FBDBKF_01535 Morganella morganii S1 - Hcp family type VI secretion system effector
FBDBKF_18025 FBDBKF_18025 Morganella morganii S1 - Hcp family type VI secretion system effector
EHELCC_00010 EHELCC_00010 Morganella morganii S2 - Hcp family type VI secretion system effector
EHELCC_16725 EHELCC_16725 Morganella morganii S2 - Hcp family type VI secretion system effector
NLDBIP_03450 NLDBIP_03450 Morganella morganii S4 - Hcp family type VI secretion system effector
NLDBIP_17725 NLDBIP_17725 Morganella morganii S4 - Hcp family type VI secretion system effector
LHKJJB_17645 LHKJJB_17645 Morganella morganii S3 - Hcp family type VI secretion system effector
LHKJJB_19860 LHKJJB_19860 Morganella morganii S3 - Hcp family type VI secretion system effector
HKOGLL_02080 HKOGLL_02080 Morganella morganii S5 - Hcp family type VI secretion system effector
HKOGLL_17460 HKOGLL_17460 Morganella morganii S5 - Hcp family type VI secretion system effector
F4V73_RS17415 F4V73_RS17415 Morganella psychrotolerans - Hcp family type VI secretion system effector
F4V73_RS18725 F4V73_RS18725 Morganella psychrotolerans - Hcp family type VI secretion system effector
PMI_RS03605 PMI_RS03605 Proteus mirabilis HI4320 - Hcp family type VI secretion system effector

Distribution of group_40 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_40 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_40

Orthogroup content: 13 members

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This page summarizes the annotation of all members of the orthologous group group_40.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 13

Product

# Product Occurence
1 Hcp family type VI secretion system effector 13

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3157 12 U Intracellular trafficking, secretion, and vesicular transport (U) Type VI protein secretion system component Hcp (secreted cytotoxin)

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K06887 13 uncharacterized protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF05638 13 Type VI secretion system effector, Hcp

Annotations of the 3 SwissProt hits

Annotation Number of occurrences
Major exported protein 1
Major exported protein (Fragment) 1
Uncharacterized protein YhhZ 1

Protein length

Min length 157
Max length 159
Mean length (sd) 158.8 (0.6)
Median length 159.0

Protein length distribution