Homologs in group_29

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14 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01365 FBDBKF_01365 100.0 Morganella morganii S1 - Type VI secretion system tube protein Hcp
FBDBKF_01535 FBDBKF_01535 44.7 Morganella morganii S1 - Hcp family type VI secretion system effector
EHELCC_00010 EHELCC_00010 44.7 Morganella morganii S2 - Hcp family type VI secretion system effector
EHELCC_00180 EHELCC_00180 100.0 Morganella morganii S2 - Type VI secretion system tube protein Hcp
NLDBIP_03450 NLDBIP_03450 44.7 Morganella morganii S4 - Hcp family type VI secretion system effector
LHKJJB_04795 LHKJJB_04795 100.0 Morganella morganii S3 - Type VI secretion system tube protein Hcp
LHKJJB_19860 LHKJJB_19860 44.7 Morganella morganii S3 - Hcp family type VI secretion system effector
HKOGLL_02080 HKOGLL_02080 44.7 Morganella morganii S5 - Hcp family type VI secretion system effector
HKOGLL_02250 HKOGLL_02250 100.0 Morganella morganii S5 - Type VI secretion system tube protein Hcp
F4V73_RS16845 F4V73_RS16845 22.4 Morganella psychrotolerans - Hcp family type VI secretion system effector
F4V73_RS17415 F4V73_RS17415 42.8 Morganella psychrotolerans - Hcp family type VI secretion system effector
F4V73_RS18725 F4V73_RS18725 47.8 Morganella psychrotolerans - Hcp family type VI secretion system effector
PMI_RS03605 PMI_RS03605 51.6 Proteus mirabilis HI4320 - Hcp family type VI secretion system effector
PMI_RS13890 PMI_RS13890 53.5 Proteus mirabilis HI4320 - Hcp family type VI secretion system effector

Distribution of the homologs in the orthogroup group_29

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_29

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P46855 1.74e-31 119 43 2 149 3 yhhZ Uncharacterized protein YhhZ Escherichia coli (strain K12)
Q9HI36 1.04e-23 94 33 4 167 1 hcpA Major exported protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P80693 2.73e-05 43 36 1 58 1 None Major exported protein (Fragment) Pseudomonas syringae pv. ribicola

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_03280
Feature type CDS
Gene -
Product Type VI secretion system tube protein Hcp
Location 640123 - 640602 (strand: 1)
Length 480 (nucleotides) / 159 (amino acids)

Contig

Accession ZDB_519
Length 680340 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_29
Orthogroup size 15
N. genomes 7

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Genomic region

Domains

PF05638 Type VI secretion system effector, Hcp

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3157 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component Hcp (secreted cytotoxin)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06887 uncharacterized protein - -

Protein Sequence

MANMIYLSVNGNQQGTISQGCCSLDSIGNKYQLGHENEIFVLHLNNMFNRAQNLAFSPVNFVKLLDKSTPLLANAIANNEVMEMVFSFYRTSQNGSQEKYFSVTLRQASIVSINSNYPHSADNNDAQPEETISVKYKDIIFQHVMAGTSGYCCWEESTC

Flanking regions ( +/- flanking 50bp)

ACAGGCAGGTCTGAAACCCGGCAGCGGCAAACAGGAATAAGGAAAAAATTATGGCGAACATGATCTATTTAAGTGTTAACGGCAACCAGCAGGGCACTATTTCACAGGGTTGCTGCAGTCTTGATTCCATCGGCAATAAATATCAGCTGGGCCATGAGAATGAAATATTTGTACTCCATCTGAATAATATGTTTAACCGCGCCCAGAACCTGGCATTCAGCCCGGTGAATTTTGTCAAACTGCTGGATAAATCCACGCCGTTACTGGCGAATGCGATTGCCAATAATGAAGTGATGGAGATGGTATTCAGCTTTTACCGGACATCCCAGAACGGTTCACAGGAAAAATACTTCAGTGTCACACTGCGCCAGGCATCCATTGTCAGCATTAACAGCAATTATCCGCACTCTGCGGATAATAATGACGCACAGCCGGAAGAAACCATCAGTGTGAAATACAAAGATATTATTTTCCAGCATGTTATGGCAGGAACATCCGGCTATTGCTGCTGGGAAGAGAGCACATGTTAATTCTCCGTATAATAAATACTGGTTACCGGCAGCCGCAGAGTCACTCATGA