Homologs in group_40

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12 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01535 FBDBKF_01535 53.5 Morganella morganii S1 - Hcp family type VI secretion system effector
FBDBKF_18025 FBDBKF_18025 48.4 Morganella morganii S1 - Hcp family type VI secretion system effector
EHELCC_00010 EHELCC_00010 53.5 Morganella morganii S2 - Hcp family type VI secretion system effector
EHELCC_16725 EHELCC_16725 48.4 Morganella morganii S2 - Hcp family type VI secretion system effector
NLDBIP_03450 NLDBIP_03450 53.5 Morganella morganii S4 - Hcp family type VI secretion system effector
NLDBIP_17725 NLDBIP_17725 48.4 Morganella morganii S4 - Hcp family type VI secretion system effector
LHKJJB_17645 LHKJJB_17645 48.4 Morganella morganii S3 - Hcp family type VI secretion system effector
LHKJJB_19860 LHKJJB_19860 53.5 Morganella morganii S3 - Hcp family type VI secretion system effector
HKOGLL_02080 HKOGLL_02080 53.5 Morganella morganii S5 - Hcp family type VI secretion system effector
HKOGLL_17460 HKOGLL_17460 48.4 Morganella morganii S5 - Hcp family type VI secretion system effector
F4V73_RS17415 F4V73_RS17415 52.9 Morganella psychrotolerans - Hcp family type VI secretion system effector
F4V73_RS18725 F4V73_RS18725 67.5 Morganella psychrotolerans - Hcp family type VI secretion system effector

Distribution of the homologs in the orthogroup group_40

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_40

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9HI36 4.87e-31 112 39 3 162 1 hcpA Major exported protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P46855 1.64e-21 92 38 4 155 3 yhhZ Uncharacterized protein YhhZ Escherichia coli (strain K12)
P80693 1.15e-06 46 47 0 44 1 None Major exported protein (Fragment) Pseudomonas syringae pv. ribicola

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS03605
Feature type CDS
Gene -
Product Hcp family type VI secretion system effector
Location 807789 - 808262 (strand: -1)
Length 474 (nucleotides) / 157 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_40
Orthogroup size 13
N. genomes 7

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Genomic region

Domains

PF05638 Type VI secretion system effector, Hcp

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3157 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component Hcp (secreted cytotoxin)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06887 uncharacterized protein - -

Protein Sequence

MANSIYLKIIGKSQGDISKGCSTLGSIGNKYQHGHEDQIFVYSFDYDLTRAQNLNHSPVVISKPIDKSSPLLGVAITNNELLECELEFYRTSSNGNQEKFYTIKLTKASITNISAHYPNSLTHADAQPYEDITIRYESISWNHICAGTSGYSISKNI

Flanking regions ( +/- flanking 50bp)

ATAAAGTTGATAATATCATATGAAGAAATATCAAAAAGGAGTTATAAATAATGGCTAATTCAATATATTTAAAGATAATAGGGAAATCTCAAGGTGATATATCCAAAGGGTGCTCTACTTTAGGATCTATAGGCAATAAATATCAGCACGGACATGAAGATCAGATATTTGTGTATTCATTTGATTATGATTTAACTCGAGCACAAAATTTAAATCATTCTCCTGTGGTAATTTCAAAACCTATAGATAAATCTTCACCCTTACTTGGGGTTGCAATAACAAATAATGAATTATTAGAGTGCGAGCTAGAATTCTATAGAACAAGTTCAAACGGCAATCAAGAAAAGTTTTATACCATTAAGCTAACAAAAGCCAGCATTACCAATATATCAGCACATTACCCTAATTCACTGACGCATGCAGATGCCCAGCCTTATGAAGATATTACTATTCGATATGAAAGTATCTCTTGGAACCATATTTGTGCAGGAACATCAGGTTATAGTATCAGCAAAAATATTTAATTTTACCGACGATGAGCGATATCATTTTTAATTTTTTATCTATAAAAAAG