Homologs in group_2487

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01365 FBDBKF_01365 100.0 Morganella morganii S1 - Type VI secretion system tube protein Hcp
EHELCC_00180 EHELCC_00180 100.0 Morganella morganii S2 - Type VI secretion system tube protein Hcp
NLDBIP_03280 NLDBIP_03280 100.0 Morganella morganii S4 - Type VI secretion system tube protein Hcp
HKOGLL_02250 HKOGLL_02250 100.0 Morganella morganii S5 - Type VI secretion system tube protein Hcp
PMI_RS13890 PMI_RS13890 53.5 Proteus mirabilis HI4320 - Hcp family type VI secretion system effector

Distribution of the homologs in the orthogroup group_2487

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2487

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P46855 1.74e-31 119 43 2 149 3 yhhZ Uncharacterized protein YhhZ Escherichia coli (strain K12)
Q9HI36 1.04e-23 94 33 4 167 1 hcpA Major exported protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P80693 2.73e-05 43 36 1 58 1 None Major exported protein (Fragment) Pseudomonas syringae pv. ribicola

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_04795
Feature type CDS
Gene -
Product Type VI secretion system tube protein Hcp
Location 247364 - 247843 (strand: 1)
Length 480 (nucleotides) / 159 (amino acids)
In genomic island -

Contig

Accession ZDB_361
Length 286024 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2487
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF05638 Type VI secretion system effector, Hcp

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3157 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component Hcp (secreted cytotoxin)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06887 uncharacterized protein - -

Protein Sequence

MANMIYLSVNGNQQGTISQGCCSLDSIGNKYQLGHENEIFVLHLNNMFNRAQNLAFSPVNFVKLLDKSTPLLANAIANNEVMEMVFSFYRTSQNGSQEKYFSVTLRQASIVSINSNYPHSADNNDAQPEETISVKYKDIIFQHVMAGTSGYCCWEESTC

Flanking regions ( +/- flanking 50bp)

ACAGGCAGGTCTGAAACCCGGCAGCGGCAAACAGGAATAAGGAAAAAATTATGGCGAACATGATCTATTTAAGTGTTAACGGCAACCAGCAGGGCACTATTTCACAGGGTTGCTGCAGTCTTGATTCCATCGGCAATAAATATCAGCTGGGCCATGAGAATGAAATATTTGTACTCCATCTGAATAATATGTTTAACCGCGCCCAGAACCTGGCATTCAGCCCGGTGAATTTTGTCAAACTGCTGGATAAATCCACGCCGTTACTGGCGAATGCGATTGCCAATAATGAAGTGATGGAGATGGTATTCAGCTTTTACCGGACATCCCAGAACGGTTCACAGGAAAAATACTTCAGTGTCACACTGCGCCAGGCATCCATTGTCAGCATTAACAGCAATTATCCGCACTCTGCGGATAATAATGACGCACAGCCGGAAGAAACCATCAGTGTGAAATACAAAGATATTATTTTCCAGCATGTTATGGCAGGAACATCCGGCTATTGCTGCTGGGAAGAGAGCACATGTTAATTCTCCGTATAATAAATACTGGTTACCGGCAGCCGCAGAGTCACTCATGA