Homologs in group_29

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14 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01365 FBDBKF_01365 22.4 Morganella morganii S1 - Type VI secretion system tube protein Hcp
FBDBKF_01535 FBDBKF_01535 25.0 Morganella morganii S1 - Hcp family type VI secretion system effector
EHELCC_00010 EHELCC_00010 25.0 Morganella morganii S2 - Hcp family type VI secretion system effector
EHELCC_00180 EHELCC_00180 22.4 Morganella morganii S2 - Type VI secretion system tube protein Hcp
NLDBIP_03280 NLDBIP_03280 22.4 Morganella morganii S4 - Type VI secretion system tube protein Hcp
NLDBIP_03450 NLDBIP_03450 25.0 Morganella morganii S4 - Hcp family type VI secretion system effector
LHKJJB_04795 LHKJJB_04795 22.4 Morganella morganii S3 - Type VI secretion system tube protein Hcp
LHKJJB_19860 LHKJJB_19860 25.0 Morganella morganii S3 - Hcp family type VI secretion system effector
HKOGLL_02080 HKOGLL_02080 25.0 Morganella morganii S5 - Hcp family type VI secretion system effector
HKOGLL_02250 HKOGLL_02250 22.4 Morganella morganii S5 - Type VI secretion system tube protein Hcp
F4V73_RS17415 F4V73_RS17415 27.6 Morganella psychrotolerans - Hcp family type VI secretion system effector
F4V73_RS18725 F4V73_RS18725 25.0 Morganella psychrotolerans - Hcp family type VI secretion system effector
PMI_RS03605 PMI_RS03605 24.0 Proteus mirabilis HI4320 - Hcp family type VI secretion system effector
PMI_RS13890 PMI_RS13890 23.7 Proteus mirabilis HI4320 - Hcp family type VI secretion system effector

Distribution of the homologs in the orthogroup group_29

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_29

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9HI36 2.06e-29 108 34 2 166 1 hcpA Major exported protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS16845
Feature type CDS
Gene -
Product Hcp family type VI secretion system effector
Location 197547 - 198038 (strand: -1)
Length 492 (nucleotides) / 163 (amino acids)

Contig

Accession term accessions NZ_VXKB01000006 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 212134 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_29
Orthogroup size 15
N. genomes 7

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Genomic region

Domains

PF05638 Type VI secretion system effector, Hcp

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3157 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component Hcp (secreted cytotoxin)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11903 type VI secretion system secreted protein Hcp Biofilm formation - Pseudomonas aeruginosa
Bacterial secretion system		 -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG048679 type VI secretion system protein, Hcp family VF0569 Effector delivery system

Protein Sequence

MAIPVYLWLKDDGGAEIKGSVNVQDREGSIEVVAQDHSLYIPTDNNTGKLTGTRIHTPFVFVKEIDASSPYLYKAVTTGQTLKSAEFKWYRIDDAGQEVEYFNTKLENVKVVKVAPKMHDVKDPSKEKHNHLEEIELRYEKITWTYKDGNIIHSDSWNERATA

Flanking regions ( +/- flanking 50bp)

GTATCACCGGCGGATGGTGATACACATTCCCCAAAAAAGGAGAAGTAACTATGGCAATCCCAGTCTACCTCTGGCTGAAAGATGACGGCGGCGCGGAAATCAAAGGTTCCGTTAATGTTCAGGATCGCGAAGGCAGTATCGAAGTGGTTGCTCAGGATCACAGCCTTTATATCCCGACAGATAACAACACCGGGAAACTGACCGGCACCCGCATCCATACTCCGTTTGTCTTTGTAAAAGAAATTGATGCGTCAAGCCCGTATCTCTACAAAGCGGTTACCACCGGACAGACGTTGAAATCAGCAGAATTCAAATGGTATCGCATTGATGATGCAGGCCAGGAAGTGGAGTACTTCAATACCAAACTGGAAAACGTAAAAGTAGTGAAAGTTGCACCAAAAATGCATGACGTAAAAGATCCGTCCAAAGAGAAACATAACCACCTGGAAGAGATCGAACTGCGCTACGAAAAAATTACCTGGACTTACAAAGACGGCAACATCATTCATTCAGATTCATGGAATGAACGCGCGACTGCCTGACATTAATAACAGGCGGGAAACCGCCTGTTTTCTTTTCAGCCTTACTCATC