Homologs in group_126

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10 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16725 FBDBKF_16725 33.7 Morganella morganii S1 hcp Type VI protein secretion system component Hcp (secreted cytotoxin)
EHELCC_10735 EHELCC_10735 33.7 Morganella morganii S2 hcp Type VI protein secretion system component Hcp (secreted cytotoxin)
NLDBIP_11080 NLDBIP_11080 33.7 Morganella morganii S4 hcp Type VI protein secretion system component Hcp (secreted cytotoxin)
LHKJJB_10275 LHKJJB_10275 33.7 Morganella morganii S3 hcp Type VI protein secretion system component Hcp (secreted cytotoxin)
HKOGLL_16440 HKOGLL_16440 33.7 Morganella morganii S5 hcp Type VI protein secretion system component Hcp (secreted cytotoxin)
F4V73_RS05140 F4V73_RS05140 33.1 Morganella psychrotolerans - Hcp family type VI secretion system effector
PMI_RS00995 PMI_RS00995 31.9 Proteus mirabilis HI4320 - Hcp family type VI secretion system effector
PMI_RS03690 PMI_RS03690 31.9 Proteus mirabilis HI4320 - Hcp family type VI secretion system effector
PMI_RS05420 PMI_RS05420 31.9 Proteus mirabilis HI4320 - Hcp family type VI secretion system effector
PMI_RS14785 PMI_RS14785 31.9 Proteus mirabilis HI4320 - Hcp family type VI secretion system effector

Distribution of the homologs in the orthogroup group_126

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_126

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9HI36 2.06e-29 108 34 2 166 1 hcpA Major exported protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS16845
Feature type CDS
Gene -
Product Hcp family type VI secretion system effector
Location 197547 - 198038 (strand: -1)
Length 492 (nucleotides) / 163 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000006
Length 212134 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_126
Orthogroup size 11
N. genomes 7

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Genomic region

Domains

PF05638 Type VI secretion system effector, Hcp

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3157 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component Hcp (secreted cytotoxin)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11903 type VI secretion system secreted protein Hcp Biofilm formation - Pseudomonas aeruginosa
Bacterial secretion system		 -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG048679 type VI secretion system protein, Hcp family VF0569 Effector delivery system

Protein Sequence

MAIPVYLWLKDDGGAEIKGSVNVQDREGSIEVVAQDHSLYIPTDNNTGKLTGTRIHTPFVFVKEIDASSPYLYKAVTTGQTLKSAEFKWYRIDDAGQEVEYFNTKLENVKVVKVAPKMHDVKDPSKEKHNHLEEIELRYEKITWTYKDGNIIHSDSWNERATA

Flanking regions ( +/- flanking 50bp)

GTATCACCGGCGGATGGTGATACACATTCCCCAAAAAAGGAGAAGTAACTATGGCAATCCCAGTCTACCTCTGGCTGAAAGATGACGGCGGCGCGGAAATCAAAGGTTCCGTTAATGTTCAGGATCGCGAAGGCAGTATCGAAGTGGTTGCTCAGGATCACAGCCTTTATATCCCGACAGATAACAACACCGGGAAACTGACCGGCACCCGCATCCATACTCCGTTTGTCTTTGTAAAAGAAATTGATGCGTCAAGCCCGTATCTCTACAAAGCGGTTACCACCGGACAGACGTTGAAATCAGCAGAATTCAAATGGTATCGCATTGATGATGCAGGCCAGGAAGTGGAGTACTTCAATACCAAACTGGAAAACGTAAAAGTAGTGAAAGTTGCACCAAAAATGCATGACGTAAAAGATCCGTCCAAAGAGAAACATAACCACCTGGAAGAGATCGAACTGCGCTACGAAAAAATTACCTGGACTTACAAAGACGGCAACATCATTCATTCAGATTCATGGAATGAACGCGCGACTGCCTGACATTAATAACAGGCGGGAAACCGCCTGTTTTCTTTTCAGCCTTACTCATC