Homologs in group_40

Help

12 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01535 FBDBKF_01535 54.7 Morganella morganii S1 - Hcp family type VI secretion system effector
FBDBKF_18025 FBDBKF_18025 45.9 Morganella morganii S1 - Hcp family type VI secretion system effector
EHELCC_00010 EHELCC_00010 54.7 Morganella morganii S2 - Hcp family type VI secretion system effector
EHELCC_16725 EHELCC_16725 45.9 Morganella morganii S2 - Hcp family type VI secretion system effector
NLDBIP_03450 NLDBIP_03450 54.7 Morganella morganii S4 - Hcp family type VI secretion system effector
NLDBIP_17725 NLDBIP_17725 45.9 Morganella morganii S4 - Hcp family type VI secretion system effector
LHKJJB_17645 LHKJJB_17645 45.9 Morganella morganii S3 - Hcp family type VI secretion system effector
LHKJJB_19860 LHKJJB_19860 54.7 Morganella morganii S3 - Hcp family type VI secretion system effector
HKOGLL_02080 HKOGLL_02080 54.7 Morganella morganii S5 - Hcp family type VI secretion system effector
HKOGLL_17460 HKOGLL_17460 45.9 Morganella morganii S5 - Hcp family type VI secretion system effector
F4V73_RS17415 F4V73_RS17415 54.1 Morganella psychrotolerans - Hcp family type VI secretion system effector
PMI_RS03605 PMI_RS03605 67.5 Proteus mirabilis HI4320 - Hcp family type VI secretion system effector

Distribution of the homologs in the orthogroup group_40

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_40

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9HI36 3.98e-33 118 40 5 175 1 hcpA Major exported protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P46855 3.65e-23 97 39 3 149 3 yhhZ Uncharacterized protein YhhZ Escherichia coli (strain K12)
P80693 2.15e-07 48 38 0 55 1 None Major exported protein (Fragment) Pseudomonas syringae pv. ribicola

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS18725
Feature type CDS
Gene -
Product Hcp family type VI secretion system effector
Location 13478 - 13957 (strand: 1)
Length 480 (nucleotides) / 159 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000010
Length 36620 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_40
Orthogroup size 13
N. genomes 7

Actions

Genomic region

Domains

PF05638 Type VI secretion system effector, Hcp

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3157 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component Hcp (secreted cytotoxin)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06887 uncharacterized protein - -

Protein Sequence

MANKIYLRLQGNKQGLISRGCSSPESIGNKYQYGHEDQIFVYSFSHDIFREQNAVHHPVIISKPIDKSSPLLGVSITNNEILTCELDFYRTGISGVQEKYYTVKLTSAAIVNISSHYPNTLTHNDVQPHESMTLCYESITWRHCAAGTSGYSINGRHPF

Flanking regions ( +/- flanking 50bp)

GGGTAAATATCAGGGAATAACCAGCTGATATTTATAAACAAAGGAATGTTATGGCAAATAAAATATACTTACGGCTGCAAGGTAATAAGCAGGGCTTAATTTCAAGAGGATGCTCATCACCGGAATCAATAGGAAATAAATATCAGTACGGACATGAAGATCAGATTTTTGTGTATTCATTCAGCCATGATATTTTCCGTGAACAAAATGCGGTTCATCACCCGGTTATTATCAGTAAACCTATTGATAAATCATCACCATTATTGGGTGTCAGCATTACAAACAATGAAATATTAACCTGTGAGCTGGATTTTTACCGGACAGGTATATCAGGGGTTCAGGAAAAATATTATACGGTAAAACTAACCAGCGCTGCGATTGTGAATATTTCATCACATTATCCTAATACGCTGACTCATAATGATGTTCAACCTCACGAGAGTATGACACTCTGTTATGAAAGCATTACATGGCGACATTGTGCTGCGGGCACGTCCGGTTACAGTATCAACGGACGGCACCCGTTTTAATCGTAAGTATATTCGTATTCAGATAAAGACATACACTCCTGATTATCCTT