Homologs in group_40

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12 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01535 FBDBKF_01535 100.0 Morganella morganii S1 - Hcp family type VI secretion system effector
FBDBKF_18025 FBDBKF_18025 50.9 Morganella morganii S1 - Hcp family type VI secretion system effector
EHELCC_16725 EHELCC_16725 50.9 Morganella morganii S2 - Hcp family type VI secretion system effector
NLDBIP_03450 NLDBIP_03450 100.0 Morganella morganii S4 - Hcp family type VI secretion system effector
NLDBIP_17725 NLDBIP_17725 50.9 Morganella morganii S4 - Hcp family type VI secretion system effector
LHKJJB_17645 LHKJJB_17645 50.9 Morganella morganii S3 - Hcp family type VI secretion system effector
LHKJJB_19860 LHKJJB_19860 100.0 Morganella morganii S3 - Hcp family type VI secretion system effector
HKOGLL_02080 HKOGLL_02080 100.0 Morganella morganii S5 - Hcp family type VI secretion system effector
HKOGLL_17460 HKOGLL_17460 50.9 Morganella morganii S5 - Hcp family type VI secretion system effector
F4V73_RS17415 F4V73_RS17415 47.2 Morganella psychrotolerans - Hcp family type VI secretion system effector
F4V73_RS18725 F4V73_RS18725 54.7 Morganella psychrotolerans - Hcp family type VI secretion system effector
PMI_RS03605 PMI_RS03605 53.5 Proteus mirabilis HI4320 - Hcp family type VI secretion system effector

Distribution of the homologs in the orthogroup group_40

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_40

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P46855 1.08e-25 103 44 3 149 3 yhhZ Uncharacterized protein YhhZ Escherichia coli (strain K12)
Q9HI36 1.18e-24 96 35 4 162 1 hcpA Major exported protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P80693 1.34e-06 46 39 0 43 1 None Major exported protein (Fragment) Pseudomonas syringae pv. ribicola

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_00010
Feature type CDS
Gene -
Product Hcp family type VI secretion system effector
Location 558 - 1037 (strand: -1)
Length 480 (nucleotides) / 159 (amino acids)
In genomic island -

Contig

Accession ZDB_213
Length 680219 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_40
Orthogroup size 13
N. genomes 7

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Genomic region

Domains

PF05638 Type VI secretion system effector, Hcp

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3157 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component Hcp (secreted cytotoxin)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06887 uncharacterized protein - -

Protein Sequence

MSYITYLKLTGSRQGLISAKCSTSESIGNRFQTGHEDEIQVLTLNHNISRSQNLSHHPVQFIKPIDMSSPLLGVSISSNEQLEAIFTCYRTNQNGRLELYYKLKLTKASIVDISSTYTNVTNSNGIIPHEKILLNYESISWEHITAGTSGYSIMENNIF

Flanking regions ( +/- flanking 50bp)

AATAGCAGGCATTGTTCTATTTATTCTATTAATTAAATAAGGAATTTAAATTGTCATATATAACATACTTAAAACTAACAGGTTCAAGGCAAGGACTGATCTCTGCAAAGTGTTCAACCTCAGAATCCATTGGAAACAGATTTCAAACTGGCCATGAAGACGAAATTCAAGTGTTAACATTGAATCATAACATATCACGTAGTCAAAACTTATCCCACCATCCTGTTCAATTTATAAAGCCAATCGATATGTCATCACCCCTCCTTGGTGTTTCAATATCATCAAATGAACAACTTGAAGCTATTTTTACTTGTTACAGAACAAACCAAAATGGGCGGCTTGAACTATATTACAAATTGAAACTAACTAAGGCCAGCATCGTAGATATATCTTCCACATATACTAATGTAACAAACTCCAATGGTATAATTCCACATGAGAAAATATTATTAAACTACGAATCAATTAGTTGGGAACACATTACAGCCGGAACAAGTGGTTACTCCATAATGGAAAATAATATTTTTTGACTAAAATGGCATGTCTTATTTATAGATATGCCATCAACGAGCCTTACTAA