PF01546


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01546, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 56 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01546
Description Peptidase family M20/M25/M40

Occurence in the database

PF01546 is associated with 56 different proteins (see tab "Protein list" and "Profile")
The 56 proteins are classified into 9 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2764 FBDBKF_07760 71765 72982 -1 ygeY YgeY family selenium metabolism-linked hydrolase Morganella morganii S1
1 group_194 FBDBKF_10655 96759 98021 -1 abgB Metal-dependent amidase/aminoacylase/carboxypeptidase Morganella morganii S1
2 group_1747 FBDBKF_12175 91449 92609 1 argE acetylornithine deacetylase Morganella morganii S1
3 group_1826 FBDBKF_13525 82501 83631 1 dapE succinyl-diaminopimelate desuccinylase Morganella morganii S1
4 group_1946 FBDBKF_14610 18111 19343 -1 pepT peptidase T Morganella morganii S1
5 group_2024 FBDBKF_15185 47265 48725 -1 pepD Di- or tripeptidase Morganella morganii S1
6 group_3032 FBDBKF_18080 16395 17654 1 argE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase Morganella morganii S1
7 group_3103 FBDBKF_19585 1519 2844 1 abgB Metal-dependent amidase/aminoacylase/carboxypeptidase Morganella morganii S1
8 group_1826 EHELCC_08570 191560 192690 -1 dapE succinyl-diaminopimelate desuccinylase Morganella morganii S2
9 group_2024 EHELCC_11060 36181 37641 1 pepD Di- or tripeptidase Morganella morganii S2
10 group_2764 EHELCC_13590 45959 47176 -1 ygeY YgeY family selenium metabolism-linked hydrolase Morganella morganii S2
11 group_1747 EHELCC_14130 42096 43256 -1 argE acetylornithine deacetylase Morganella morganii S2
12 group_194 EHELCC_14990 96749 98011 -1 abgB Metal-dependent amidase/aminoacylase/carboxypeptidase Morganella morganii S2
13 group_1946 EHELCC_15415 48187 49419 -1 pepT peptidase T Morganella morganii S2
14 group_3032 EHELCC_16780 16395 17654 1 argE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase Morganella morganii S2
15 group_3103 EHELCC_16875 36746 38071 1 abgB Metal-dependent amidase/aminoacylase/carboxypeptidase Morganella morganii S2
16 group_1826 NLDBIP_08895 191560 192690 -1 dapE succinyl-diaminopimelate desuccinylase Morganella morganii S4
17 group_2024 NLDBIP_11405 36181 37641 1 pepD Di- or tripeptidase Morganella morganii S4
18 group_2764 NLDBIP_14035 66834 68051 -1 ygeY YgeY family selenium metabolism-linked hydrolase Morganella morganii S4
19 group_194 NLDBIP_14820 96749 98011 -1 abgB Metal-dependent amidase/aminoacylase/carboxypeptidase Morganella morganii S4
20 group_1747 NLDBIP_15225 46033 47193 -1 argE acetylornithine deacetylase Morganella morganii S4
21 group_1946 NLDBIP_15945 48187 49419 -1 pepT peptidase T Morganella morganii S4
22 group_3103 NLDBIP_17575 17695 19020 -1 abgB Metal-dependent amidase/aminoacylase/carboxypeptidase Morganella morganii S4
23 group_3032 NLDBIP_17670 38112 39371 -1 argE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase Morganella morganii S4
24 group_1826 LHKJJB_05370 64469 65599 1 dapE succinyl-diaminopimelate desuccinylase Morganella morganii S3
25 group_2764 LHKJJB_08815 91698 92915 1 ygeY YgeY family selenium metabolism-linked hydrolase Morganella morganii S3
26 group_2024 LHKJJB_11265 36181 37641 1 pepD Di- or tripeptidase Morganella morganii S3
27 group_194 LHKJJB_14525 43715 44977 1 abgB Metal-dependent amidase/aminoacylase/carboxypeptidase Morganella morganii S3
28 group_1747 LHKJJB_15385 91449 92609 1 argE acetylornithine deacetylase Morganella morganii S3
29 group_1946 LHKJJB_15895 67267 68499 1 pepT peptidase T Morganella morganii S3
30 group_3103 LHKJJB_17495 17695 19020 -1 abgB Metal-dependent amidase/aminoacylase/carboxypeptidase Morganella morganii S3
31 group_3032 LHKJJB_17590 38112 39371 -1 argE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase Morganella morganii S3
32 group_1826 HKOGLL_05545 176151 177281 -1 dapE succinyl-diaminopimelate desuccinylase Morganella morganii S5
33 group_2764 HKOGLL_08365 91698 92915 1 ygeY YgeY family selenium metabolism-linked hydrolase Morganella morganii S5
34 group_2024 HKOGLL_09875 36181 37641 1 pepD Di- or tripeptidase Morganella morganii S5
35 group_194 HKOGLL_13145 43715 44977 1 abgB Metal-dependent amidase/aminoacylase/carboxypeptidase Morganella morganii S5
36 group_1747 HKOGLL_14505 78112 79272 1 argE acetylornithine deacetylase Morganella morganii S5
37 group_1946 HKOGLL_15015 66479 67711 1 pepT peptidase T Morganella morganii S5
38 group_3103 HKOGLL_17310 17695 19020 -1 abgB Metal-dependent amidase/aminoacylase/carboxypeptidase Morganella morganii S5
39 group_3032 HKOGLL_17405 38112 39371 -1 argE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase Morganella morganii S5
40 group_1826 F4V73_RS03235 690219 691349 -1 dapE succinyl-diaminopimelate desuccinylase Morganella psychrotolerans
41 group_1946 F4V73_RS07405 1546345 1547580 -1 pepT peptidase T Morganella psychrotolerans
42 group_2024 F4V73_RS12260 35671 37131 1 pepD beta-Ala-His dipeptidase Morganella psychrotolerans
43 group_3856 F4V73_RS13165 250943 252190 1 pepT peptidase T Morganella psychrotolerans
44 group_2764 F4V73_RS13285 285124 286341 1 YgeY family selenium metabolism-linked hydrolase Morganella psychrotolerans
45 group_194 F4V73_RS14365 99623 100801 -1 M20 family metallopeptidase Morganella psychrotolerans
46 group_1747 F4V73_RS16985 19149 20309 1 argE acetylornithine deacetylase Morganella psychrotolerans
47 group_3856 PMI_RS00710 182893 184146 -1 pepT peptidase T Proteus mirabilis HI4320
48 group_3032 PMI_RS01385 341514 342770 -1 Zn-dependent hydrolase Proteus mirabilis HI4320
49 group_2024 PMI_RS01745 414121 415578 -1 aminoacyl-histidine dipeptidase Proteus mirabilis HI4320
50 group_1946 PMI_RS04330 973047 974291 1 pepT peptidase T Proteus mirabilis HI4320
51 group_1826 PMI_RS07575 1654004 1655134 1 dapE succinyl-diaminopimelate desuccinylase Proteus mirabilis HI4320
52 group_194 PMI_RS15245 3382289 3383422 1 M20 family metallopeptidase Proteus mirabilis HI4320
53 group_194 PMI_RS15980 3550855 3552036 -1 M20 family metallopeptidase Proteus mirabilis HI4320
54 group_1747 PMI_RS16000 3555684 3556847 -1 argE acetylornithine deacetylase Proteus mirabilis HI4320
55 group_194 PMI_RS18280 4008961 4010226 -1 amidohydrolase Proteus mirabilis HI4320