Orthogroup:group_2788


Homologs in group_2788

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08930 FBDBKF_08930 Morganella morganii S1 nikC nickel ABC transporter permease subunit NikC
EHELCC_10480 EHELCC_10480 Morganella morganii S2 nikC nickel ABC transporter permease subunit NikC
NLDBIP_10825 NLDBIP_10825 Morganella morganii S4 nikC nickel ABC transporter permease subunit NikC
LHKJJB_10530 LHKJJB_10530 Morganella morganii S3 nikC nickel ABC transporter permease subunit NikC
HKOGLL_13590 HKOGLL_13590 Morganella morganii S5 nikC nickel ABC transporter permease subunit NikC
PMI_RS14560 PMI_RS14560 Proteus mirabilis HI4320 - ABC transporter permease subunit

Distribution of group_2788 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2788 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2788

Orthogroup content: 6 members

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This page summarizes the annotation of all members of the orthologous group group_2788.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 nikC 5
2 - 1

Product

# Product Occurence
1 nickel ABC transporter permease subunit NikC 5
2 ABC transporter permease subunit 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1173 6 EP Amino acid transport and metabolism (E)
Inorganic ion transport and metabolism (P)		 ABC-type dipeptide/oligopeptide/nickel transport system, permease component

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K15586 6 nickel transport system permease protein ABC transporters -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00528 6 Binding-protein-dependent transport system inner membrane component
PF12911 6 N-terminal TM domain of oligopeptide transport permease C

Annotations of the 72 SwissProt hits

Annotation Number of occurrences
Di/tripeptide transport system permease protein DppC 1
Dipeptide transport system permease protein DppC 7
Glutathione transport system permease protein GsiD 16
Inner membrane ABC transporter permease protein YejE 1
Metal-staphylopine import system permease protein CntC 2
Nickel import system permease protein NikC 9
Nickel transport system permease protein NikC 2
Oligopeptide transport system permease protein AmiD 2
Oligopeptide transport system permease protein AppC 1
Oligopeptide transport system permease protein OppB 1
Oligopeptide transport system permease protein OppC 9
Peptide transport system permease protein SapC 5
Peptidoglycan transport system permease protein YejE 1
Probable D,D-dipeptide transport system permease protein DdpC 1
Probable peptide ABC transporter permease protein y4tQ 1
Putative peptide permease protein BAB2_0815 1
Putative peptide permease protein BMEII0861 1
Putative peptide permease protein BOV_A0350 1
Putative peptide permease protein BRA0407/BS1330_II0404 1
Putative peptide permease protein BruAb2_0794 1
Putative peptide transport permease protein MT1319 1
Putative peptide transport permease protein Mb1313c 1
Putative peptide transport permease protein Rv1282c 1
Putative peptide transport system permease protein BAB2_1051 1
Putative peptide transport system permease protein BMEII0207/BMEII0208 1
Putative peptide transport system permease protein BRA1093/BS1330_II1085 1
Putative peptide transport system permease protein BruAb2_1032 1
Putrescine export system permease protein SapC 1

Protein length

Min length 287
Max length 289
Mean length (sd) 287.3 (0.8)
Median length 287.0

Protein length distribution