PF01370

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF01370
Protein list: lists the 48 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF01370
Description NAD dependent epimerase/dehydratase family

Occurence in the database

PF01370 is associated with 48 different proteins
The 48 proteins are classified into 7 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_249 FBDBKF_05350 78768 79781 -1 wcaG Nucleoside-diphosphate-sugar epimerase Morganella morganii S1
1 group_1258 FBDBKF_06940 52085 52912 1 wcaG Nucleoside-diphosphate-sugar epimerase Morganella morganii S1
2 group_1699 FBDBKF_11055 34465 35481 1 galE UDP-glucose 4-epimerase GalE Morganella morganii S1
3 group_1837 FBDBKF_13370 51037 53022 -1 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA Morganella morganii S1
4 group_1946 FBDBKF_14225 44893 45804 1 yfcH NAD dependent epimerase/dehydratase family enzyme Morganella morganii S1
5 group_2205 FBDBKF_16315 50805 51743 -1 rfaD ADP-glyceromanno-heptose 6-epimerase Morganella morganii S1
6 group_2211 FBDBKF_16360 59123 60073 -1 UDP-glucose 4-epimerase Morganella morganii S1
7 group_1258 EHELCC_04030 133274 134101 -1 wcaG Nucleoside-diphosphate-sugar epimerase Morganella morganii S2
8 group_1699 EHELCC_05170 23987 25003 -1 galE UDP-glucose 4-epimerase GalE Morganella morganii S2
9 group_1946 EHELCC_08055 71181 72092 -1 yfcH NAD dependent epimerase/dehydratase family enzyme Morganella morganii S2
10 group_1837 EHELCC_08725 222169 224154 1 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA Morganella morganii S2
11 group_249 EHELCC_12240 101713 102726 1 wcaG Nucleoside-diphosphate-sugar epimerase Morganella morganii S2
12 group_2205 EHELCC_16350 50805 51743 -1 rfaD ADP-glyceromanno-heptose 6-epimerase Morganella morganii S2
13 group_2211 EHELCC_16395 59123 60073 -1 UDP-glucose 4-epimerase Morganella morganii S2
14 group_1258 NLDBIP_04030 133070 133897 -1 wcaG Nucleoside-diphosphate-sugar epimerase Morganella morganii S4
15 group_1699 NLDBIP_05490 65052 66068 -1 galE UDP-glucose 4-epimerase GalE Morganella morganii S4
16 group_1946 NLDBIP_08380 71181 72092 -1 yfcH NAD dependent epimerase/dehydratase family enzyme Morganella morganii S4
17 group_1837 NLDBIP_09050 222169 224154 1 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA Morganella morganii S4
18 group_249 NLDBIP_12580 101668 102681 1 wcaG Nucleoside-diphosphate-sugar epimerase Morganella morganii S4
19 group_2211 NLDBIP_16945 2097 3047 1 UDP-glucose 4-epimerase Morganella morganii S4
20 group_2205 NLDBIP_16990 10427 11365 1 rfaD ADP-glyceromanno-heptose 6-epimerase Morganella morganii S4
21 group_1699 LHKJJB_02370 42576 43592 -1 galE UDP-glucose 4-epimerase GalE Morganella morganii S3
22 group_1837 LHKJJB_05215 33005 34990 -1 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA Morganella morganii S3
23 group_1946 LHKJJB_05885 185067 185978 1 yfcH NAD dependent epimerase/dehydratase family enzyme Morganella morganii S3
24 group_1258 LHKJJB_09860 133184 134011 -1 wcaG Nucleoside-diphosphate-sugar epimerase Morganella morganii S3
25 group_249 LHKJJB_12440 101713 102726 1 wcaG Nucleoside-diphosphate-sugar epimerase Morganella morganii S3
26 group_2211 LHKJJB_16865 5199 6149 1 UDP-glucose 4-epimerase Morganella morganii S3
27 group_2205 LHKJJB_16910 13529 14467 1 rfaD ADP-glyceromanno-heptose 6-epimerase Morganella morganii S3
28 group_1946 HKOGLL_05030 55772 56683 -1 yfcH NAD dependent epimerase/dehydratase family enzyme Morganella morganii S5
29 group_1837 HKOGLL_05700 206760 208745 1 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA Morganella morganii S5
30 group_1258 HKOGLL_09115 57041 57868 1 wcaG Nucleoside-diphosphate-sugar epimerase Morganella morganii S5
31 group_249 HKOGLL_11055 101713 102726 1 wcaG Nucleoside-diphosphate-sugar epimerase Morganella morganii S5
32 group_1699 HKOGLL_15750 66016 67032 -1 galE UDP-glucose 4-epimerase GalE Morganella morganii S5
33 group_2205 HKOGLL_16930 50805 51743 -1 rfaD ADP-glyceromanno-heptose 6-epimerase Morganella morganii S5
34 group_2211 HKOGLL_16975 59123 60073 -1 UDP-glucose 4-epimerase Morganella morganii S5
35 group_1258 F4V73_RS01125 236991 237818 1 SDR family oxidoreductase Morganella psychrotolerans
36 group_1946 F4V73_RS02685 564727 565638 -1 TIGR01777 family oxidoreductase Morganella psychrotolerans
37 group_1837 F4V73_RS03390 722789 724774 1 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA Morganella psychrotolerans
38 group_249 F4V73_RS05805 1235674 1236690 -1 NAD-dependent epimerase Morganella psychrotolerans
39 group_2211 F4V73_RS16250 61182 62186 -1 NAD(P)-dependent oxidoreductase Morganella psychrotolerans
40 group_2211 F4V73_RS17215 74863 75813 1 NAD-dependent epimerase/dehydratase family protein Morganella psychrotolerans
41 group_2205 F4V73_RS17275 87549 88487 1 rfaD ADP-glyceromanno-heptose 6-epimerase Morganella psychrotolerans
42 group_1258 PMI_RS03280 724671 725492 1 SDR family oxidoreductase Proteus mirabilis HI4320
43 group_1837 PMI_RS05080 1109779 1111761 1 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA Proteus mirabilis HI4320
44 group_249 PMI_RS07210 1579323 1580330 -1 NAD-dependent epimerase Proteus mirabilis HI4320
45 group_1946 PMI_RS08735 1911202 1912107 1 TIGR01777 family oxidoreductase Proteus mirabilis HI4320
46 group_2205 PMI_RS15705 3488695 3489633 -1 rfaD ADP-glyceromanno-heptose 6-epimerase Proteus mirabilis HI4320
47 group_249 PMI_RS15765 3500964 3501974 -1 NAD-dependent epimerase Proteus mirabilis HI4320