Homologs in group_1946

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14225 FBDBKF_14225 56.5 Morganella morganii S1 yfcH NAD dependent epimerase/dehydratase family enzyme
EHELCC_08055 EHELCC_08055 56.5 Morganella morganii S2 yfcH NAD dependent epimerase/dehydratase family enzyme
NLDBIP_08380 NLDBIP_08380 56.5 Morganella morganii S4 yfcH NAD dependent epimerase/dehydratase family enzyme
LHKJJB_05885 LHKJJB_05885 56.5 Morganella morganii S3 yfcH NAD dependent epimerase/dehydratase family enzyme
HKOGLL_05030 HKOGLL_05030 56.5 Morganella morganii S5 yfcH NAD dependent epimerase/dehydratase family enzyme
F4V73_RS02685 F4V73_RS02685 58.1 Morganella psychrotolerans - TIGR01777 family oxidoreductase

Distribution of the homologs in the orthogroup group_1946

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1946

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77775 4.54e-133 382 62 1 298 3 yfcH Epimerase family protein YfcH Escherichia coli (strain K12)
P71373 5.03e-91 275 50 4 302 3 HI_1208 Epimerase family protein HI_1208 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P73467 2.85e-71 225 40 4 311 3 slr1223 Epimerase family protein slr1223 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q6GIM1 7.88e-70 221 41 6 300 3 SAR0825 Epimerase family protein SAR0825 Staphylococcus aureus (strain MRSA252)
Q99VK8 1.58e-69 221 40 6 302 3 SAV0769 Epimerase family protein SAV0769 Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q7A6Q5 1.58e-69 221 40 6 302 1 SA0724 Epimerase family protein SA0724 Staphylococcus aureus (strain N315)
Q6GB61 3.44e-69 219 40 6 302 3 SAS0734 Epimerase family protein SAS0734 Staphylococcus aureus (strain MSSA476)
Q8NXL7 3.44e-69 219 40 6 302 3 MW0731 Epimerase family protein MW0731 Staphylococcus aureus (strain MW2)
Q2YSF6 5.53e-69 219 41 6 300 3 SAB0724c Epimerase family protein SAB0724c Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q5HHP9 8.91e-69 219 40 6 302 3 SACOL0834 Epimerase family protein SACOL0834 Staphylococcus aureus (strain COL)
Q2G035 8.91e-69 219 40 6 302 3 SAOUHSC_00792 Epimerase family protein SAOUHSC_00792 Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FIM4 8.91e-69 219 40 6 302 3 SAUSA300_0753 Epimerase family protein SAUSA300_0753 Staphylococcus aureus (strain USA300)
Q9SJU9 1.05e-68 220 39 4 304 2 GC1 Epimerase family protein SDR39U1 homolog, chloroplastic Arabidopsis thaliana
Q49VZ4 4.75e-67 214 40 4 298 3 SSP1921 Epimerase family protein SSP1921 Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q8CPY7 1.3e-65 210 38 4 297 3 SE_0553 Epimerase family protein SE_0553 Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HQV8 1.3e-65 210 38 4 297 3 SERP0438 Epimerase family protein SERP0438 Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q4L4J7 4.74e-65 209 39 6 303 3 SH2119 Epimerase family protein SH2119 Staphylococcus haemolyticus (strain JCSC1435)
O31574 1.75e-59 195 36 5 308 3 yfhF Epimerase family protein YfhF Bacillus subtilis (strain 168)
P67233 5.14e-57 188 38 5 294 3 BQ2027_MB2239 Epimerase family protein Mb2239 Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WGP7 5.14e-57 188 38 5 294 1 Rv2216 Epimerase family protein Rv2216 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGP6 5.14e-57 188 38 5 294 3 MT2273 Epimerase family protein MT2273 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q5M8N4 1.19e-55 184 34 7 302 1 Sdr39u1 Epimerase family protein SDR39U1 Mus musculus
O32960 1.27e-54 182 35 5 294 3 ML0860 Epimerase family protein ML0860 Mycobacterium leprae (strain TN)
Q17QH8 1.12e-53 179 34 8 303 2 SDR39U1 Epimerase family protein SDR39U1 Bos taurus
Q9NRG7 2.56e-52 176 34 7 302 1 SDR39U1 Epimerase family protein SDR39U1 Homo sapiens
P24550 5.57e-12 67 36 3 125 3 rcp Protein Rcp Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q54L85 8.52e-08 56 26 12 255 3 nsdhl Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating Dictyostelium discoideum

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS08735
Feature type CDS
Gene -
Product TIGR01777 family oxidoreductase
Location 1911202 - 1912107 (strand: 1)
Length 906 (nucleotides) / 301 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1946
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01370 NAD dependent epimerase/dehydratase family
PF08338 Domain of unknown function (DUF1731)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1090 General function prediction only (R) R NAD dependent epimerase/dehydratase family enzyme

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07071 uncharacterized protein - -

Protein Sequence

MNILITGGTGLIGRALICQLALDKHNITVLSRSPQKVYSHFCNEMACWTHLDDKENLNQFDAVINLAGEPIADKRWTPEQKQTLVNSRCKLTQKLVDLIKASDSPPSVLISGSAVGFYGDQGENNVTEETPPKDEFTHQLCAKWENIALDAQTPLTRVCLLRTGIVLSTKGGALPKMSPPFKLGLGGKLGNGKQYMPWIHIDDMVNAIVFLLNNNNTQGAFNLTAPHPVQNKAFTTTLAHVLKRPAFMTVPATILKLMMGESATLVLGGQQAFPKKLLDAGFSFRYPQLEGALEDIIRHKK

Flanking regions ( +/- flanking 50bp)

TATCAGGATGATACAACCTTAATTAGGATAGAGTAATCAGGAGGATGGTGATGAATATACTTATCACAGGTGGAACCGGATTAATTGGCAGAGCACTTATCTGCCAACTCGCATTAGATAAACATAATATTACCGTACTTTCCCGTTCGCCACAGAAAGTCTACTCTCATTTCTGTAATGAAATGGCGTGTTGGACGCATTTAGATGATAAAGAAAACTTAAACCAATTTGATGCAGTGATTAATCTTGCTGGAGAACCAATTGCAGACAAACGCTGGACACCGGAGCAAAAACAAACGTTAGTTAATAGTCGATGCAAATTAACCCAAAAGCTGGTGGATTTAATAAAAGCCAGCGACTCTCCCCCTAGTGTTTTAATTTCTGGCTCTGCGGTGGGTTTTTATGGTGATCAAGGTGAAAATAATGTCACTGAAGAGACGCCACCTAAGGATGAATTTACTCATCAACTCTGTGCCAAATGGGAAAATATTGCACTCGATGCACAAACGCCATTAACACGGGTGTGTTTGCTACGTACTGGTATTGTACTCTCTACAAAAGGAGGGGCATTACCTAAAATGAGCCCGCCTTTTAAATTAGGTTTAGGTGGAAAATTAGGTAATGGTAAGCAATATATGCCATGGATACATATTGATGATATGGTCAATGCCATCGTATTTTTACTTAATAATAACAATACCCAAGGCGCCTTTAATCTGACAGCCCCTCATCCAGTACAAAATAAAGCATTTACCACGACTTTAGCTCACGTACTGAAACGCCCTGCATTTATGACGGTTCCTGCCACAATATTAAAATTAATGATGGGAGAAAGTGCCACATTAGTTTTAGGTGGGCAACAAGCGTTTCCTAAGAAACTGCTCGATGCAGGATTCAGCTTTCGTTACCCACAACTGGAAGGCGCTTTAGAAGATATTATTCGCCATAAAAAATAGTCACTCGTCACACAGGGGATCAACGGGCAGGTTTATCCCCTTGCCAACGC