Homologs in group_1258

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06940 FBDBKF_06940 84.0 Morganella morganii S1 wcaG Nucleoside-diphosphate-sugar epimerase
EHELCC_04030 EHELCC_04030 84.0 Morganella morganii S2 wcaG Nucleoside-diphosphate-sugar epimerase
NLDBIP_04030 NLDBIP_04030 84.0 Morganella morganii S4 wcaG Nucleoside-diphosphate-sugar epimerase
LHKJJB_09860 LHKJJB_09860 84.0 Morganella morganii S3 wcaG Nucleoside-diphosphate-sugar epimerase
HKOGLL_09115 HKOGLL_09115 84.0 Morganella morganii S5 wcaG Nucleoside-diphosphate-sugar epimerase
PMI_RS03280 PMI_RS03280 59.0 Proteus mirabilis HI4320 - SDR family oxidoreductase

Distribution of the homologs in the orthogroup group_1258

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1258

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AD12 4.31e-103 304 59 2 274 1 yeeZ Protein YeeZ Escherichia coli (strain K12)
P0AD13 4.31e-103 304 59 2 274 3 yeeZ Protein YeeZ Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01125
Feature type CDS
Gene -
Product SDR family oxidoreductase
Location 236991 - 237818 (strand: 1)
Length 828 (nucleotides) / 275 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000001
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1258
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF01370 NAD dependent epimerase/dehydratase family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0451 Cell wall/membrane/envelope biogenesis (M) M Nucleoside-diphosphate-sugar epimerase

Protein Sequence

MKTVSIAGLGWLGMPLAQQLTEIGIHVKGTKTTPDGVEAATMCGIECYLLNLTPEPECDADDLDAFLETDILVITLPASKTAGGGYQYVRAVQNLVDTAVARGVSRIIFTGSTSVYGNQTGLLTEKSSLEPVTESAKAIVDIEYWLNALPGVSADILRLAGLVGQYRHAGRFLAGKTEVKGGEQAVNLVHQDDVIAAIRLLIQRPHGGHVYNLCAPQHPSRAEFYPEVSRQINLLPPTFRQDDHSEGKIIDGSLICRELGFEYQYPDPGRMPMSE

Flanking regions ( +/- flanking 50bp)

TTGCAACTTCTTTTTTTCTTAAAAAATAAGCTACTGAGAGGTCAATCACGATGAAAACAGTTTCAATTGCAGGGCTGGGCTGGCTGGGAATGCCGCTGGCACAGCAACTGACGGAAATCGGTATTCATGTCAAAGGAACGAAAACCACACCCGATGGTGTGGAAGCGGCAACAATGTGTGGTATTGAGTGTTATCTTCTGAATTTAACACCAGAACCGGAGTGTGATGCTGACGACCTGGATGCCTTTCTGGAGACAGATATTCTGGTTATCACACTACCGGCATCCAAAACAGCGGGTGGCGGATATCAGTATGTGCGAGCAGTTCAAAACCTGGTGGATACTGCTGTGGCGCGGGGTGTATCGCGCATTATTTTTACCGGATCAACGTCTGTCTACGGCAATCAGACCGGGCTGCTGACAGAAAAAAGTTCGTTGGAGCCGGTAACGGAATCGGCGAAAGCGATAGTCGATATTGAATATTGGCTGAATGCACTGCCGGGTGTCTCTGCGGATATTTTACGGCTGGCGGGGCTGGTGGGGCAATACCGCCATGCAGGGCGCTTCCTGGCAGGAAAAACAGAGGTAAAAGGCGGGGAACAGGCGGTAAACCTGGTACATCAGGATGATGTGATCGCCGCTATCCGTCTGCTTATTCAGCGTCCGCACGGCGGGCATGTTTATAATCTGTGTGCGCCGCAGCACCCGTCGCGGGCAGAATTTTATCCTGAGGTTTCCCGTCAGATTAATTTGCTGCCACCGACTTTCAGGCAAGATGATCACTCTGAAGGAAAAATCATTGACGGCAGCCTGATCTGCCGGGAACTGGGTTTTGAGTATCAGTACCCTGATCCCGGACGGATGCCGATGAGTGAGTGAGCCTTAACTGACCGGCAGGGCAACGATATCTTTGTATGCCGGCCGGCTCA