Orthogroup:group_249


Homologs in group_249

Help

8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_03225 FBDBKF_03225 Morganella morganii S1 kdsD arabinose-5-phosphate isomerase KdsD
EHELCC_07310 EHELCC_07310 Morganella morganii S2 kdsD arabinose-5-phosphate isomerase KdsD
NLDBIP_07635 NLDBIP_07635 Morganella morganii S4 kdsD arabinose-5-phosphate isomerase KdsD
LHKJJB_07170 LHKJJB_07170 Morganella morganii S3 kdsD arabinose-5-phosphate isomerase KdsD
HKOGLL_03760 HKOGLL_03760 Morganella morganii S5 kdsD arabinose-5-phosphate isomerase KdsD
F4V73_RS11695 F4V73_RS11695 Morganella psychrotolerans kdsD arabinose-5-phosphate isomerase KdsD
F4V73_RS12535 F4V73_RS12535 Morganella psychrotolerans - CBS domain-containing protein
PMI_RS18175 PMI_RS18175 Proteus mirabilis HI4320 kdsD arabinose-5-phosphate isomerase KdsD

Distribution of group_249 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_249 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_249

Orthogroup content: 8 members

Help

This page summarizes the annotation of all members of the orthologous group group_249.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 kdsD 7
2 - 1

Product

# Product Occurence
1 arabinose-5-phosphate isomerase KdsD 7
2 CBS domain-containing protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0794 7 GM Carbohydrate transport and metabolism (G)
Cell wall/membrane/envelope biogenesis (M)		 D-arabinose 5-phosphate isomerase GutQ
COG3448 1 T Signal transduction mechanisms (T) CBS-domain-containing membrane protein

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K06041 7 arabinose-5-phosphate isomerase [EC:5.3.1.13] Lipopolysaccharide biosynthesis
Metabolic pathways
Biosynthesis of nucleotide sugars		 CMP-KDO biosynthesis

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00571 8 CBS domain
PF01380 7 SIS domain
PF04972 1 BON domain

Annotations of the 64 SwissProt hits

Annotation Number of occurrences
5'-AMP-activated protein kinase subunit gamma-3 1
A-adding tRNA nucleotidyltransferase 3
Acetoin utilization protein AcuB 1
Arabinose 5-phosphate isomerase GutQ 6
Arabinose 5-phosphate isomerase KdsD 9
Arabinose 5-phosphate isomerase KpsF 3
CBS domain-containing protein CBSCBSPB2 1
CBS domain-containing protein CBSX1, chloroplastic 1
CBS domain-containing protein CBSX2, chloroplastic 1
CBS domain-containing protein DDB_G0289609 1
CBS domain-containing protein YhcV 1
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 3
Homoserine O-acetyltransferase 3
Hypoxic response protein 1 2
Inosine-5'-monophosphate dehydrogenase 6
L-aspartate semialdehyde sulfurtransferase 1
Probable arabinose 5-phosphate isomerase 2
Uncharacterized HTH-type transcriptional regulator TM_0326 1
Uncharacterized phosphosugar isomerase aq_1546 1
Uncharacterized protein AF_1796 1
Uncharacterized protein APE_1940.1 1
Uncharacterized protein CPn_0526/CP_0226/CPj0526/CpB0547 1
Uncharacterized protein CT_399 1
Uncharacterized protein HP_1429 1
Uncharacterized protein MJ0653 1
Uncharacterized protein MJ0868 1
Uncharacterized protein MJ0922 1
Uncharacterized protein MJ1225 1
Uncharacterized protein MJ1404 1
Uncharacterized protein MJ1426 1
Uncharacterized protein MK0525 1
Uncharacterized protein RP505 1
Uncharacterized protein TC_0679 1
Uncharacterized protein YlbB 1
Uncharacterized protein jhp_1324 1
Zinc metalloprotease MJ0392 1

Protein length

Min length 242
Max length 328
Mean length (sd) 312.8 (28.7)
Median length 322.0

Protein length distribution