Help to interpret the results
Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF00425
Protein list: lists the 21 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.
Description
| External link | PF00425 |
|---|---|
| Description | chorismate binding enzyme |
Occurence in the database
| PF00425 is associated with 21 different proteins |
| The 21 proteins are classified into 3 different orthogroup(s) |
| Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism | |
|---|---|---|---|---|---|---|---|---|
| 0 | group_652 | FBDBKF_01645 | 22631 | 24010 | -1 | pabB | aminodeoxychorismate synthase component 1 | Morganella morganii S1 |
| 1 | group_1014 | FBDBKF_05155 | 38388 | 39938 | 1 | trpE | anthranilate synthase component 1 | Morganella morganii S1 |
| 2 | group_1923 | FBDBKF_14090 | 10956 | 12287 | -1 | menF | Isochorismate synthase EntC | Morganella morganii S1 |
| 3 | group_652 | EHELCC_02115 | 410451 | 411830 | -1 | pabB | aminodeoxychorismate synthase component 1 | Morganella morganii S2 |
| 4 | group_1923 | EHELCC_08190 | 104698 | 106029 | 1 | menF | Isochorismate synthase EntC | Morganella morganii S2 |
| 5 | group_1014 | EHELCC_12435 | 141556 | 143106 | -1 | trpE | anthranilate synthase component 1 | Morganella morganii S2 |
| 6 | group_652 | NLDBIP_01345 | 268306 | 269685 | 1 | pabB | aminodeoxychorismate synthase component 1 | Morganella morganii S4 |
| 7 | group_1923 | NLDBIP_08515 | 104698 | 106029 | 1 | menF | Isochorismate synthase EntC | Morganella morganii S4 |
| 8 | group_1014 | NLDBIP_12775 | 141511 | 143061 | -1 | trpE | anthranilate synthase component 1 | Morganella morganii S4 |
| 9 | group_652 | LHKJJB_00690 | 123000 | 124379 | -1 | pabB | aminodeoxychorismate synthase component 1 | Morganella morganii S3 |
| 10 | group_1923 | LHKJJB_05750 | 151130 | 152461 | -1 | menF | Isochorismate synthase EntC | Morganella morganii S3 |
| 11 | group_1014 | LHKJJB_12635 | 141556 | 143106 | -1 | trpE | anthranilate synthase component 1 | Morganella morganii S3 |
| 12 | group_652 | HKOGLL_00730 | 128511 | 129890 | -1 | pabB | aminodeoxychorismate synthase component 1 | Morganella morganii S5 |
| 13 | group_1923 | HKOGLL_05165 | 89289 | 90620 | 1 | menF | Isochorismate synthase EntC | Morganella morganii S5 |
| 14 | group_1014 | HKOGLL_11250 | 141556 | 143106 | -1 | trpE | anthranilate synthase component 1 | Morganella morganii S5 |
| 15 | group_1923 | F4V73_RS02845 | 602094 | 603431 | 1 | isochorismate synthase | Morganella psychrotolerans | |
| 16 | group_652 | F4V73_RS03985 | 845678 | 847060 | -1 | pabB | aminodeoxychorismate synthase component 1 | Morganella psychrotolerans |
| 17 | group_1014 | F4V73_RS05610 | 1193482 | 1195041 | 1 | anthranilate synthase component 1 | Morganella psychrotolerans | |
| 18 | group_1014 | PMI_RS06480 | 1421585 | 1423162 | 1 | anthranilate synthase component 1 | Proteus mirabilis HI4320 | |
| 19 | group_652 | PMI_RS07835 | 1715008 | 1716402 | 1 | pabB | aminodeoxychorismate synthase component 1 | Proteus mirabilis HI4320 |
| 20 | group_1923 | PMI_RS08570 | 1869555 | 1870883 | -1 | isochorismate synthase | Proteus mirabilis HI4320 |
