PF00425


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00425, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00425
Description chorismate binding enzyme

Occurence in the database

PF00425 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_577 FBDBKF_01645 22631 24010 -1 pabB aminodeoxychorismate synthase component 1 Morganella morganii S1
1 group_946 FBDBKF_05155 38388 39938 1 trpE anthranilate synthase component 1 Morganella morganii S1
2 group_1885 FBDBKF_14090 10956 12287 -1 menF Isochorismate synthase EntC Morganella morganii S1
3 group_577 EHELCC_02115 410451 411830 -1 pabB aminodeoxychorismate synthase component 1 Morganella morganii S2
4 group_1885 EHELCC_08190 104698 106029 1 menF Isochorismate synthase EntC Morganella morganii S2
5 group_946 EHELCC_12435 141556 143106 -1 trpE anthranilate synthase component 1 Morganella morganii S2
6 group_577 NLDBIP_01345 268306 269685 1 pabB aminodeoxychorismate synthase component 1 Morganella morganii S4
7 group_1885 NLDBIP_08515 104698 106029 1 menF Isochorismate synthase EntC Morganella morganii S4
8 group_946 NLDBIP_12775 141511 143061 -1 trpE anthranilate synthase component 1 Morganella morganii S4
9 group_577 LHKJJB_00690 123000 124379 -1 pabB aminodeoxychorismate synthase component 1 Morganella morganii S3
10 group_1885 LHKJJB_05750 151130 152461 -1 menF Isochorismate synthase EntC Morganella morganii S3
11 group_946 LHKJJB_12635 141556 143106 -1 trpE anthranilate synthase component 1 Morganella morganii S3
12 group_577 HKOGLL_00730 128511 129890 -1 pabB aminodeoxychorismate synthase component 1 Morganella morganii S5
13 group_1885 HKOGLL_05165 89289 90620 1 menF Isochorismate synthase EntC Morganella morganii S5
14 group_946 HKOGLL_11250 141556 143106 -1 trpE anthranilate synthase component 1 Morganella morganii S5
15 group_1885 F4V73_RS02845 602094 603431 1 isochorismate synthase Morganella psychrotolerans
16 group_577 F4V73_RS03985 845678 847060 -1 pabB aminodeoxychorismate synthase component 1 Morganella psychrotolerans
17 group_946 F4V73_RS05610 1193482 1195041 1 anthranilate synthase component 1 Morganella psychrotolerans
18 group_946 PMI_RS06480 1421585 1423162 1 anthranilate synthase component 1 Proteus mirabilis HI4320
19 group_577 PMI_RS07835 1715008 1716402 1 pabB aminodeoxychorismate synthase component 1 Proteus mirabilis HI4320
20 group_1885 PMI_RS08570 1869555 1870883 -1 isochorismate synthase Proteus mirabilis HI4320