Orthogroup:group_1923


Homologs in group_1923

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14305 FBDBKF_14305 Morganella morganii S1 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC
EHELCC_07975 EHELCC_07975 Morganella morganii S2 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC
NLDBIP_08300 NLDBIP_08300 Morganella morganii S4 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC
LHKJJB_05965 LHKJJB_05965 Morganella morganii S3 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC
HKOGLL_04950 HKOGLL_04950 Morganella morganii S5 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC
F4V73_RS02600 F4V73_RS02600 Morganella psychrotolerans mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC
PMI_RS08805 PMI_RS08805 Proteus mirabilis HI4320 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC

Distribution of group_1923 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1923 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1923

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1923.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 mnmC 7

Product

# Product Occurence
1 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG4121 7 J Translation, ribosomal structure and biogenesis (J) tRNA U34 5-methylaminomethyl-2-thiouridine-forming methyltransferase MnmC

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K15461 7 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01266 7 FAD dependent oxidoreductase
PF05430 7 S-adenosyl-L-methionine-dependent methyltransferase

Annotations of the 181 SwissProt hits

Annotation Number of occurrences
D-amino acid dehydrogenase 1 1
Uncharacterized protein HI_1536 1
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 179

Protein length

Min length 670
Max length 701
Mean length (sd) 693.4 (13.2)
Median length 701.0

Protein length distribution