Orthogroup:group_652


Homologs in group_652

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_02230 FBDBKF_02230 Morganella morganii S1 rnd ribonuclease D
EHELCC_02700 EHELCC_02700 Morganella morganii S2 rnd ribonuclease D
NLDBIP_00760 NLDBIP_00760 Morganella morganii S4 rnd ribonuclease D
LHKJJB_01275 LHKJJB_01275 Morganella morganii S3 rnd ribonuclease D
HKOGLL_01315 HKOGLL_01315 Morganella morganii S5 rnd ribonuclease D
F4V73_RS04600 F4V73_RS04600 Morganella psychrotolerans rnd ribonuclease D
PMI_RS05630 PMI_RS05630 Proteus mirabilis HI4320 rnd ribonuclease D

Distribution of group_652 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_652 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_652

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_652.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rnd 7

Product

# Product Occurence
1 ribonuclease D 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0349 7 J Translation, ribosomal structure and biogenesis (J) Ribonuclease D

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03684 7 ribonuclease D [EC:3.1.13.5] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00570 7 HRDC domain
PF01612 7 3'-5' exonuclease
PF21293 7 Ribonuclease D, C-terminal HRDC domain

Annotations of the 33 SwissProt hits

Annotation Number of occurrences
DNA polymerase I 1
Exonuclease mut-7 homolog 2
Exosome complex component 10 3
Exosome complex component 10 homolog 2
Exosome complex exonuclease RRP6 1
Exosome complex exonuclease rrp6 1
Protein RRP6-like 1 1
Protein RRP6-like 2 1
Protein RRP6-like 3 1
Ribonuclease D 20

Protein length

Min length 372
Max length 383
Mean length (sd) 380.0 (3.6)
Median length 381.0

Protein length distribution