PF00009

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF00009
Protein list: lists the 47 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF00009
Description Elongation factor Tu GTP binding domain

Occurence in the database

PF00009 is associated with 47 different proteins
The 47 proteins are classified into 7 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_635 FBDBKF_01425 277969 279768 -1 lepA translation elongation factor 4 Morganella morganii S1
1 group_1460 FBDBKF_08670 114429 117161 1 infB translation initiation factor IF-2 Morganella morganii S1
2 group_1725 FBDBKF_11740 220 2346 -1 fusA elongation factor G Morganella morganii S1
3 group_1773 FBDBKF_12095 72044 73864 -1 typA ribosome-dependent GTPase TypA Morganella morganii S1
4 group_2184 FBDBKF_16145 19775 21637 1 selB selenocysteine-specific translation elongation factor Morganella morganii S1
5 group_2348 FBDBKF_17790 19522 21111 -1 prfC peptide chain release factor 3 Morganella morganii S1
6 group_635 EHELCC_00120 29100 30899 1 lepA translation elongation factor 4 Morganella morganii S2
7 group_2348 EHELCC_09815 198954 200543 -1 prfC peptide chain release factor 3 Morganella morganii S2
8 group_1460 EHELCC_12855 46564 49296 -1 infB translation initiation factor IF-2 Morganella morganii S2
9 group_1773 EHELCC_14210 60841 62661 1 typA ribosome-dependent GTPase TypA Morganella morganii S2
10 group_1725 EHELCC_14565 132359 134485 1 fusA elongation factor G Morganella morganii S2
11 group_2184 EHELCC_16180 19775 21637 1 selB selenocysteine-specific translation elongation factor Morganella morganii S2
12 group_635 NLDBIP_03340 649237 651036 -1 lepA translation elongation factor 4 Morganella morganii S4
13 group_2348 NLDBIP_10195 198954 200543 -1 prfC peptide chain release factor 3 Morganella morganii S4
14 group_1460 NLDBIP_13195 46564 49296 -1 infB translation initiation factor IF-2 Morganella morganii S4
15 group_1773 NLDBIP_15305 64778 66598 1 typA ribosome-dependent GTPase TypA Morganella morganii S4
16 group_1725 NLDBIP_15665 136296 138422 1 fusA elongation factor G Morganella morganii S4
17 group_2184 NLDBIP_17160 40533 42395 -1 selB selenocysteine-specific translation elongation factor Morganella morganii S4
18 group_635 LHKJJB_04855 256478 258277 -1 lepA translation elongation factor 4 Morganella morganii S3
19 group_2348 LHKJJB_07560 16695 18284 1 prfC peptide chain release factor 3 Morganella morganii S3
20 group_1460 LHKJJB_13360 113147 115879 1 infB translation initiation factor IF-2 Morganella morganii S3
21 group_1725 LHKJJB_14950 220 2346 -1 fusA elongation factor G Morganella morganii S3
22 group_1773 LHKJJB_15305 72044 73864 -1 typA ribosome-dependent GTPase TypA Morganella morganii S3
23 group_2184 LHKJJB_17080 43635 45497 -1 selB selenocysteine-specific translation elongation factor Morganella morganii S3
24 group_635 HKOGLL_02190 29305 31104 1 lepA translation elongation factor 4 Morganella morganii S5
25 group_2348 HKOGLL_07110 16695 18284 1 prfC peptide chain release factor 3 Morganella morganii S5
26 group_1460 HKOGLL_11670 46564 49296 -1 infB translation initiation factor IF-2 Morganella morganii S5
27 group_1773 HKOGLL_14425 58707 60527 -1 typA ribosome-dependent GTPase TypA Morganella morganii S5
28 group_2184 HKOGLL_16760 19775 21637 1 selB selenocysteine-specific translation elongation factor Morganella morganii S5
29 group_1725 HKOGLL_19340 11005 13131 1 fusA elongation factor G Morganella morganii S5
30 group_635 F4V73_RS01970 428770 430566 1 lepA translation elongation factor 4 Morganella psychrotolerans
31 group_1460 F4V73_RS09895 81592 84327 1 infB translation initiation factor IF-2 Morganella psychrotolerans
32 group_1773 F4V73_RS14550 140366 142186 1 typA translational GTPase TypA Morganella psychrotolerans
33 group_1725 F4V73_RS14920 215921 218047 1 fusA elongation factor G Morganella psychrotolerans
34 group_154 F4V73_RS14925 218124 219308 1 tuf elongation factor Tu Morganella psychrotolerans
35 group_2348 F4V73_RS15175 14105 15694 1 prfC peptide chain release factor 3 Morganella psychrotolerans
36 group_2184 F4V73_RS17470 124550 126412 -1 selB selenocysteine-specific translation elongation factor Morganella psychrotolerans
37 group_154 F4V73_RS18900 4447 5631 1 tuf elongation factor Tu Morganella psychrotolerans
38 group_635 PMI_RS09330 2036340 2038136 -1 lepA translation elongation factor 4 Proteus mirabilis HI4320
39 group_154 PMI_RS11060 2433227 2434684 -1 cysN sulfate adenylyltransferase subunit CysN Proteus mirabilis HI4320
40 group_2348 PMI_RS11980 2649499 2651088 -1 prfC peptide chain release factor 3 Proteus mirabilis HI4320
41 group_154 PMI_RS13790 3065932 3067116 -1 tuf elongation factor Tu Proteus mirabilis HI4320
42 group_1725 PMI_RS13795 3067184 3069298 -1 fusA elongation factor G Proteus mirabilis HI4320
43 group_1773 PMI_RS14240 3158166 3160001 -1 typA ribosome-dependent GTPase TypA Proteus mirabilis HI4320
44 group_2184 PMI_RS15370 3414035 3415897 -1 selB selenocysteine-specific translation elongation factor Proteus mirabilis HI4320
45 group_154 PMI_RS16130 3579887 3581071 1 tuf elongation factor Tu Proteus mirabilis HI4320
46 group_1460 PMI_RS17025 3744710 3747460 1 infB translation initiation factor IF-2 Proteus mirabilis HI4320