PF00009


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00009, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 47 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00009
Description Elongation factor Tu GTP binding domain

Occurence in the database

PF00009 is associated with 47 different proteins (see tab "Protein list" and "Profile")
The 47 proteins are classified into 7 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_561 FBDBKF_01425 277969 279768 -1 lepA translation elongation factor 4 Morganella morganii S1
1 group_1404 FBDBKF_08670 114429 117161 1 infB translation initiation factor IF-2 Morganella morganii S1
2 group_1682 FBDBKF_11740 220 2346 -1 fusA elongation factor G Morganella morganii S1
3 group_1733 FBDBKF_12095 72044 73864 -1 typA ribosome-dependent GTPase TypA Morganella morganii S1
4 group_2149 FBDBKF_16145 19775 21637 1 selB selenocysteine-specific translation elongation factor Morganella morganii S1
5 group_2316 FBDBKF_17790 19522 21111 -1 prfC peptide chain release factor 3 Morganella morganii S1
6 group_561 EHELCC_00120 29100 30899 1 lepA translation elongation factor 4 Morganella morganii S2
7 group_2316 EHELCC_09815 198954 200543 -1 prfC peptide chain release factor 3 Morganella morganii S2
8 group_1404 EHELCC_12855 46564 49296 -1 infB translation initiation factor IF-2 Morganella morganii S2
9 group_1733 EHELCC_14210 60841 62661 1 typA ribosome-dependent GTPase TypA Morganella morganii S2
10 group_1682 EHELCC_14565 132359 134485 1 fusA elongation factor G Morganella morganii S2
11 group_2149 EHELCC_16180 19775 21637 1 selB selenocysteine-specific translation elongation factor Morganella morganii S2
12 group_561 NLDBIP_03340 649237 651036 -1 lepA translation elongation factor 4 Morganella morganii S4
13 group_2316 NLDBIP_10195 198954 200543 -1 prfC peptide chain release factor 3 Morganella morganii S4
14 group_1404 NLDBIP_13195 46564 49296 -1 infB translation initiation factor IF-2 Morganella morganii S4
15 group_1733 NLDBIP_15305 64778 66598 1 typA ribosome-dependent GTPase TypA Morganella morganii S4
16 group_1682 NLDBIP_15665 136296 138422 1 fusA elongation factor G Morganella morganii S4
17 group_2149 NLDBIP_17160 40533 42395 -1 selB selenocysteine-specific translation elongation factor Morganella morganii S4
18 group_561 LHKJJB_04855 256478 258277 -1 lepA translation elongation factor 4 Morganella morganii S3
19 group_2316 LHKJJB_07560 16695 18284 1 prfC peptide chain release factor 3 Morganella morganii S3
20 group_1404 LHKJJB_13360 113147 115879 1 infB translation initiation factor IF-2 Morganella morganii S3
21 group_1682 LHKJJB_14950 220 2346 -1 fusA elongation factor G Morganella morganii S3
22 group_1733 LHKJJB_15305 72044 73864 -1 typA ribosome-dependent GTPase TypA Morganella morganii S3
23 group_2149 LHKJJB_17080 43635 45497 -1 selB selenocysteine-specific translation elongation factor Morganella morganii S3
24 group_561 HKOGLL_02190 29305 31104 1 lepA translation elongation factor 4 Morganella morganii S5
25 group_2316 HKOGLL_07110 16695 18284 1 prfC peptide chain release factor 3 Morganella morganii S5
26 group_1404 HKOGLL_11670 46564 49296 -1 infB translation initiation factor IF-2 Morganella morganii S5
27 group_1733 HKOGLL_14425 58707 60527 -1 typA ribosome-dependent GTPase TypA Morganella morganii S5
28 group_2149 HKOGLL_16760 19775 21637 1 selB selenocysteine-specific translation elongation factor Morganella morganii S5
29 group_1682 HKOGLL_19340 11005 13131 1 fusA elongation factor G Morganella morganii S5
30 group_561 F4V73_RS01970 428770 430566 1 lepA translation elongation factor 4 Morganella psychrotolerans
31 group_1404 F4V73_RS09895 81592 84327 1 infB translation initiation factor IF-2 Morganella psychrotolerans
32 group_1733 F4V73_RS14550 140366 142186 1 typA translational GTPase TypA Morganella psychrotolerans
33 group_1682 F4V73_RS14920 215921 218047 1 fusA elongation factor G Morganella psychrotolerans
34 group_169 F4V73_RS14925 218124 219308 1 tuf elongation factor Tu Morganella psychrotolerans
35 group_2316 F4V73_RS15175 14105 15694 1 prfC peptide chain release factor 3 Morganella psychrotolerans
36 group_2149 F4V73_RS17470 124550 126412 -1 selB selenocysteine-specific translation elongation factor Morganella psychrotolerans
37 group_169 F4V73_RS18900 4447 5631 1 tuf elongation factor Tu Morganella psychrotolerans
38 group_561 PMI_RS09330 2036340 2038136 -1 lepA translation elongation factor 4 Proteus mirabilis HI4320
39 group_169 PMI_RS11060 2433227 2434684 -1 cysN sulfate adenylyltransferase subunit CysN Proteus mirabilis HI4320
40 group_2316 PMI_RS11980 2649499 2651088 -1 prfC peptide chain release factor 3 Proteus mirabilis HI4320
41 group_169 PMI_RS13790 3065932 3067116 -1 tuf elongation factor Tu Proteus mirabilis HI4320
42 group_1682 PMI_RS13795 3067184 3069298 -1 fusA elongation factor G Proteus mirabilis HI4320
43 group_1733 PMI_RS14240 3158166 3160001 -1 typA ribosome-dependent GTPase TypA Proteus mirabilis HI4320
44 group_2149 PMI_RS15370 3414035 3415897 -1 selB selenocysteine-specific translation elongation factor Proteus mirabilis HI4320
45 group_169 PMI_RS16130 3579887 3581071 1 tuf elongation factor Tu Proteus mirabilis HI4320
46 group_1404 PMI_RS17025 3744710 3747460 1 infB translation initiation factor IF-2 Proteus mirabilis HI4320