COG5002


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG5002, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 22 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Sensor histidine kinase WalK
Function(s) descr. Signal transduction mechanisms (T)

Occurence in the database

COG5002 is associated with 22 different proteins (see tab "Protein list" and "Profile")
The 22 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1773 FBDBKF_12335 130145 131515 1 cpxA envelope stress sensor histidine kinase CpxA Morganella morganii S1
1 group_407 FBDBKF_16475 18096 19457 -1 baeS two-component system sensor histidine kinase BaeS Morganella morganii S1
2 group_2266 FBDBKF_17430 17305 18600 -1 phoR phosphate regulon sensor histidine kinase PhoR Morganella morganii S1
3 group_407 EHELCC_08340 135082 136443 -1 baeS two-component system sensor histidine kinase BaeS Morganella morganii S2
4 group_1773 EHELCC_13970 3190 4560 -1 cpxA envelope stress sensor histidine kinase CpxA Morganella morganii S2
5 group_2266 EHELCC_17325 17305 18600 -1 phoR phosphate regulon sensor histidine kinase PhoR Morganella morganii S2
6 group_407 NLDBIP_08665 135082 136443 -1 baeS two-component system sensor histidine kinase BaeS Morganella morganii S4
7 group_1773 NLDBIP_15065 7127 8497 -1 cpxA envelope stress sensor histidine kinase CpxA Morganella morganii S4
8 group_2266 NLDBIP_17870 24196 25491 1 phoR phosphate regulon sensor histidine kinase PhoR Morganella morganii S4
9 group_407 LHKJJB_05600 120716 122077 1 baeS two-component system sensor histidine kinase BaeS Morganella morganii S3
10 group_1773 LHKJJB_15545 130145 131515 1 cpxA envelope stress sensor histidine kinase CpxA Morganella morganii S3
11 group_2266 LHKJJB_17790 24194 25489 1 phoR phosphate regulon sensor histidine kinase PhoR Morganella morganii S3
12 group_407 HKOGLL_05315 119673 121034 -1 baeS two-component system sensor histidine kinase BaeS Morganella morganii S5
13 group_1773 HKOGLL_14665 116808 118178 1 cpxA envelope stress sensor histidine kinase CpxA Morganella morganii S5
14 group_2266 HKOGLL_17800 24194 25489 1 phoR phosphate regulon sensor histidine kinase PhoR Morganella morganii S5
15 group_407 F4V73_RS02990 634008 635378 -1 baeS two-component system sensor histidine kinase BaeS Morganella psychrotolerans
16 group_646 F4V73_RS03910 828333 829730 -1 Cu(+)/Ag(+) sensor histidine kinase Morganella psychrotolerans
17 group_2266 F4V73_RS16605 141038 142333 -1 phoR phosphate regulon sensor histidine kinase PhoR Morganella psychrotolerans
18 group_1773 F4V73_RS17165 64599 65969 1 cpxA envelope stress sensor histidine kinase CpxA Morganella psychrotolerans
19 group_2266 PMI_RS00255 79657 80949 1 phoR phosphate regulon sensor histidine kinase PhoR Proteus mirabilis HI4320
20 group_407 PMI_RS07745 1695686 1697062 1 baeS two-component system sensor histidine kinase BaeS Proteus mirabilis HI4320
21 group_1773 PMI_RS15815 3512374 3513741 -1 cpxA envelope stress sensor histidine kinase CpxA Proteus mirabilis HI4320