COG3829
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3829, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 45 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description | RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains |
---|---|
Function(s) descr. | Transcription (K) Signal transduction mechanisms (T) |
Occurence in the database
COG3829 is associated with 45 different proteins (see tab "Protein list" and "Profile") |
The 45 proteins are classified into 7 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_551 | FBDBKF_01340 | 261037 | 261834 | 1 | Fis family transcriptional regulator | Morganella morganii S1 | |
1 | group_2530 | FBDBKF_02315 | 150962 | 152485 | -1 | norR | nitric oxide reductase transcriptional regulator NorR | Morganella morganii S1 |
2 | group_2589 | FBDBKF_02925 | 278648 | 280261 | -1 | prpR | propionate catabolism operon regulatory protein PrpR | Morganella morganii S1 |
3 | group_786 | FBDBKF_03640 | 130988 | 132595 | 1 | fhlA | FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains | Morganella morganii S1 |
4 | group_1005 | FBDBKF_05615 | 129917 | 130903 | 1 | pspF | phage shock protein operon transcriptional activator | Morganella morganii S1 |
5 | group_2767 | FBDBKF_07775 | 75987 | 77837 | 1 | AAA domain-containing protein | Morganella morganii S1 | |
6 | group_2850 | FBDBKF_10630 | 89303 | 90949 | 1 | rocR | RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains | Morganella morganii S1 |
7 | group_551 | EHELCC_00205 | 47034 | 47831 | -1 | Fis family transcriptional regulator | Morganella morganii S2 | |
8 | group_2530 | EHELCC_02785 | 538782 | 540305 | -1 | norR | nitric oxide reductase transcriptional regulator NorR | Morganella morganii S2 |
9 | group_2589 | EHELCC_03395 | 666468 | 668081 | -1 | prpR | propionate catabolism operon regulatory protein PrpR | Morganella morganii S2 |
10 | group_786 | EHELCC_06895 | 114508 | 116115 | -1 | fhlA | FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains | Morganella morganii S2 |
11 | group_1005 | EHELCC_11975 | 50591 | 51577 | -1 | pspF | phage shock protein operon transcriptional activator | Morganella morganii S2 |
12 | group_2767 | EHELCC_13605 | 50181 | 52031 | 1 | AAA domain-containing protein | Morganella morganii S2 | |
13 | group_2850 | EHELCC_14965 | 89293 | 90939 | 1 | rocR | RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains | Morganella morganii S2 |
14 | group_2589 | NLDBIP_00065 | 12055 | 13668 | 1 | prpR | propionate catabolism operon regulatory protein PrpR | Morganella morganii S4 |
15 | group_2530 | NLDBIP_00675 | 139831 | 141354 | 1 | norR | nitric oxide reductase transcriptional regulator NorR | Morganella morganii S4 |
16 | group_551 | NLDBIP_03255 | 632305 | 633102 | 1 | Fis family transcriptional regulator | Morganella morganii S4 | |
17 | group_786 | NLDBIP_07220 | 114381 | 115988 | -1 | fhlA | FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains | Morganella morganii S4 |
18 | group_1005 | NLDBIP_12315 | 50546 | 51532 | -1 | pspF | phage shock protein operon transcriptional activator | Morganella morganii S4 |
19 | group_2767 | NLDBIP_14050 | 71056 | 72906 | 1 | AAA domain-containing protein | Morganella morganii S4 | |
20 | group_2850 | NLDBIP_14795 | 89293 | 90939 | 1 | rocR | RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains | Morganella morganii S4 |
21 | group_2530 | LHKJJB_01360 | 251331 | 252854 | -1 | norR | nitric oxide reductase transcriptional regulator NorR | Morganella morganii S3 |
22 | group_2589 | LHKJJB_01970 | 379017 | 380630 | -1 | prpR | propionate catabolism operon regulatory protein PrpR | Morganella morganii S3 |
23 | group_551 | LHKJJB_04770 | 239546 | 240343 | 1 | Fis family transcriptional regulator | Morganella morganii S3 | |
24 | group_786 | LHKJJB_06755 | 78127 | 79734 | -1 | fhlA | FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains | Morganella morganii S3 |
25 | group_2767 | LHKJJB_08800 | 86843 | 88693 | -1 | AAA domain-containing protein | Morganella morganii S3 | |
26 | group_1005 | LHKJJB_12175 | 50591 | 51577 | -1 | pspF | phage shock protein operon transcriptional activator | Morganella morganii S3 |
27 | group_2850 | LHKJJB_14550 | 50787 | 52433 | -1 | rocR | RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains | Morganella morganii S3 |
28 | group_2530 | HKOGLL_01400 | 256842 | 258365 | -1 | norR | nitric oxide reductase transcriptional regulator NorR | Morganella morganii S5 |
29 | group_2589 | HKOGLL_02010 | 384528 | 386141 | -1 | prpR | propionate catabolism operon regulatory protein PrpR | Morganella morganii S5 |
30 | group_551 | HKOGLL_02275 | 47239 | 48036 | -1 | Fis family transcriptional regulator | Morganella morganii S5 | |
31 | group_786 | HKOGLL_04175 | 153653 | 155260 | 1 | fhlA | FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains | Morganella morganii S5 |
32 | group_2767 | HKOGLL_08350 | 86843 | 88693 | -1 | AAA domain-containing protein | Morganella morganii S5 | |
33 | group_1005 | HKOGLL_10790 | 50591 | 51577 | -1 | pspF | phage shock protein operon transcriptional activator | Morganella morganii S5 |
34 | group_2850 | HKOGLL_13170 | 50787 | 52433 | -1 | rocR | RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains | Morganella morganii S5 |
35 | group_551 | F4V73_RS02330 | 494241 | 495050 | -1 | hypothetical protein | Morganella psychrotolerans | |
36 | group_1005 | F4V73_RS03690 | 784077 | 785093 | -1 | pspF | phage shock protein operon transcriptional activator | Morganella psychrotolerans |
37 | group_2530 | F4V73_RS04690 | 989312 | 990832 | -1 | norR | nitric oxide reductase transcriptional regulator NorR | Morganella psychrotolerans |
38 | group_2589 | F4V73_RS05370 | 1138799 | 1140409 | -1 | prpR | propionate catabolism operon regulatory protein PrpR | Morganella psychrotolerans |
39 | group_786 | F4V73_RS11225 | 386033 | 387670 | -1 | sigma 54-interacting transcriptional regulator | Morganella psychrotolerans | |
40 | group_2767 | F4V73_RS13270 | 280123 | 282030 | -1 | sigma 54-interacting transcriptional regulator | Morganella psychrotolerans | |
41 | group_2850 | F4V73_RS14340 | 91790 | 93427 | 1 | sigma 54-interacting transcriptional regulator | Morganella psychrotolerans | |
42 | group_551 | PMI_RS03635 | 817147 | 817935 | -1 | helix-turn-helix domain-containing protein | Proteus mirabilis HI4320 | |
43 | group_1005 | PMI_RS06650 | 1454644 | 1455648 | 1 | pspF | phage shock protein operon transcriptional activator | Proteus mirabilis HI4320 |
44 | group_786 | PMI_RS17810 | 3913195 | 3914808 | -1 | sigma 54-interacting transcriptional regulator | Proteus mirabilis HI4320 |