COG3829


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3829, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 45 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains
Function(s) descr. Transcription (K)
Signal transduction mechanisms (T)

Occurence in the database

COG3829 is associated with 45 different proteins (see tab "Protein list" and "Profile")
The 45 proteins are classified into 7 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_551 FBDBKF_01340 261037 261834 1 Fis family transcriptional regulator Morganella morganii S1
1 group_2530 FBDBKF_02315 150962 152485 -1 norR nitric oxide reductase transcriptional regulator NorR Morganella morganii S1
2 group_2589 FBDBKF_02925 278648 280261 -1 prpR propionate catabolism operon regulatory protein PrpR Morganella morganii S1
3 group_786 FBDBKF_03640 130988 132595 1 fhlA FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S1
4 group_1005 FBDBKF_05615 129917 130903 1 pspF phage shock protein operon transcriptional activator Morganella morganii S1
5 group_2767 FBDBKF_07775 75987 77837 1 AAA domain-containing protein Morganella morganii S1
6 group_2850 FBDBKF_10630 89303 90949 1 rocR RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S1
7 group_551 EHELCC_00205 47034 47831 -1 Fis family transcriptional regulator Morganella morganii S2
8 group_2530 EHELCC_02785 538782 540305 -1 norR nitric oxide reductase transcriptional regulator NorR Morganella morganii S2
9 group_2589 EHELCC_03395 666468 668081 -1 prpR propionate catabolism operon regulatory protein PrpR Morganella morganii S2
10 group_786 EHELCC_06895 114508 116115 -1 fhlA FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S2
11 group_1005 EHELCC_11975 50591 51577 -1 pspF phage shock protein operon transcriptional activator Morganella morganii S2
12 group_2767 EHELCC_13605 50181 52031 1 AAA domain-containing protein Morganella morganii S2
13 group_2850 EHELCC_14965 89293 90939 1 rocR RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S2
14 group_2589 NLDBIP_00065 12055 13668 1 prpR propionate catabolism operon regulatory protein PrpR Morganella morganii S4
15 group_2530 NLDBIP_00675 139831 141354 1 norR nitric oxide reductase transcriptional regulator NorR Morganella morganii S4
16 group_551 NLDBIP_03255 632305 633102 1 Fis family transcriptional regulator Morganella morganii S4
17 group_786 NLDBIP_07220 114381 115988 -1 fhlA FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S4
18 group_1005 NLDBIP_12315 50546 51532 -1 pspF phage shock protein operon transcriptional activator Morganella morganii S4
19 group_2767 NLDBIP_14050 71056 72906 1 AAA domain-containing protein Morganella morganii S4
20 group_2850 NLDBIP_14795 89293 90939 1 rocR RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S4
21 group_2530 LHKJJB_01360 251331 252854 -1 norR nitric oxide reductase transcriptional regulator NorR Morganella morganii S3
22 group_2589 LHKJJB_01970 379017 380630 -1 prpR propionate catabolism operon regulatory protein PrpR Morganella morganii S3
23 group_551 LHKJJB_04770 239546 240343 1 Fis family transcriptional regulator Morganella morganii S3
24 group_786 LHKJJB_06755 78127 79734 -1 fhlA FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S3
25 group_2767 LHKJJB_08800 86843 88693 -1 AAA domain-containing protein Morganella morganii S3
26 group_1005 LHKJJB_12175 50591 51577 -1 pspF phage shock protein operon transcriptional activator Morganella morganii S3
27 group_2850 LHKJJB_14550 50787 52433 -1 rocR RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S3
28 group_2530 HKOGLL_01400 256842 258365 -1 norR nitric oxide reductase transcriptional regulator NorR Morganella morganii S5
29 group_2589 HKOGLL_02010 384528 386141 -1 prpR propionate catabolism operon regulatory protein PrpR Morganella morganii S5
30 group_551 HKOGLL_02275 47239 48036 -1 Fis family transcriptional regulator Morganella morganii S5
31 group_786 HKOGLL_04175 153653 155260 1 fhlA FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S5
32 group_2767 HKOGLL_08350 86843 88693 -1 AAA domain-containing protein Morganella morganii S5
33 group_1005 HKOGLL_10790 50591 51577 -1 pspF phage shock protein operon transcriptional activator Morganella morganii S5
34 group_2850 HKOGLL_13170 50787 52433 -1 rocR RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S5
35 group_551 F4V73_RS02330 494241 495050 -1 hypothetical protein Morganella psychrotolerans
36 group_1005 F4V73_RS03690 784077 785093 -1 pspF phage shock protein operon transcriptional activator Morganella psychrotolerans
37 group_2530 F4V73_RS04690 989312 990832 -1 norR nitric oxide reductase transcriptional regulator NorR Morganella psychrotolerans
38 group_2589 F4V73_RS05370 1138799 1140409 -1 prpR propionate catabolism operon regulatory protein PrpR Morganella psychrotolerans
39 group_786 F4V73_RS11225 386033 387670 -1 sigma 54-interacting transcriptional regulator Morganella psychrotolerans
40 group_2767 F4V73_RS13270 280123 282030 -1 sigma 54-interacting transcriptional regulator Morganella psychrotolerans
41 group_2850 F4V73_RS14340 91790 93427 1 sigma 54-interacting transcriptional regulator Morganella psychrotolerans
42 group_551 PMI_RS03635 817147 817935 -1 helix-turn-helix domain-containing protein Proteus mirabilis HI4320
43 group_1005 PMI_RS06650 1454644 1455648 1 pspF phage shock protein operon transcriptional activator Proteus mirabilis HI4320
44 group_786 PMI_RS17810 3913195 3914808 -1 sigma 54-interacting transcriptional regulator Proteus mirabilis HI4320