Orthogroup:group_1005


Homologs in group_1005

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_05615 FBDBKF_05615 Morganella morganii S1 pspF phage shock protein operon transcriptional activator
EHELCC_11975 EHELCC_11975 Morganella morganii S2 pspF phage shock protein operon transcriptional activator
NLDBIP_12315 NLDBIP_12315 Morganella morganii S4 pspF phage shock protein operon transcriptional activator
LHKJJB_12175 LHKJJB_12175 Morganella morganii S3 pspF phage shock protein operon transcriptional activator
HKOGLL_10790 HKOGLL_10790 Morganella morganii S5 pspF phage shock protein operon transcriptional activator
F4V73_RS03690 F4V73_RS03690 Morganella psychrotolerans pspF phage shock protein operon transcriptional activator
PMI_RS06650 PMI_RS06650 Proteus mirabilis HI4320 pspF phage shock protein operon transcriptional activator

Distribution of group_1005 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1005 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1005

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1005.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 pspF 7

Product

# Product Occurence
1 phage shock protein operon transcriptional activator 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3829 7 KT Transcription (K)
Signal transduction mechanisms (T)		 RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03974 7 psp operon transcriptional activator - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00158 7 Sigma-54 interaction domain
PF02954 6 Bacterial regulatory protein, Fis family

Annotations of the 156 SwissProt hits

Annotation Number of occurrences
Acetoin catabolism regulatory protein 1
Acetoin dehydrogenase operon transcriptional activator AcoR 1
Alginate biosynthesis transcriptional regulatory protein AlgB 3
Anaerobic nitric oxide reductase transcription regulator NorR 52
C4-dicarboxylate transport transcriptional regulatory protein DctD 3
DNA-binding transcriptional activator HyfR 1
DNA-binding transcriptional regulator NtrC 10
Formate hydrogenlyase transcriptional activator 2
Formate hydrogenlyase transcriptional activator FhlA 1
Glycerol metabolism operon regulatory protein 1
HTH-type transcriptional regulatory protein TyrR 6
Hydrogenase transcriptional regulatory protein HoxA 2
Hydrogenase transcriptional regulatory protein HupR1 1
Limonene hydroxylase 1
Luminescence regulatory protein LuxO 2
Nif-specific regulatory protein 16
Nif-specific regulatory protein (Fragment) 1
Nitric oxide reductase transcription regulator NorR1 1
Nitric oxide reductase transcription regulator NorR2 1
Nitrogen assimilation regulatory protein NtrX 1
Nitrogen fixation protein AnfA 1
Nitrogen fixation protein VnfA 1
PTS-dependent dihydroxyacetone kinase operon regulatory protein 1
Pathogenicity locus probable regulatory protein HrpR 1
Pathogenicity locus probable regulatory protein HrpS 2
Pathogenicity locus probable regulatory protein WtsA 1
Phenol regulator MopR 1
Phosphoglycerate transport system transcriptional regulatory protein PgtA 1
Propionate catabolism operon regulatory protein 2
Psp operon transcriptional activator 1
Putative response regulator NtrX-like 5
Putative sigma L-dependent transcriptional regulator YplP 1
Putative sigma L-dependent transcriptional regulator YqiR 1
Putative transcriptional regulatory protein y4pA 1
Putative uric acid sigma-54-dependent transcriptional regulator UacR 1
Regulatory protein AtoC 1
Regulatory protein LuxO 5
Response regulator protein FleR 1
Response regulator protein PilR 1
Sigma54-dependent transcriptional activator SfnR 1
Sigma54-dependent transcriptional regulator SfnR 1
Signal-transduction and transcriptional-control protein 1
Transcriptional activator RocR 1
Transcriptional regulator FleQ 1
Transcriptional regulator VasH 1
Transcriptional regulatory protein DagR 1
Transcriptional regulatory protein FlbD 1
Transcriptional regulatory protein FlgR 1
Transcriptional regulatory protein GlrR 1
Transcriptional regulatory protein LevR 1
Transcriptional regulatory protein QseF 1
Transcriptional regulatory protein RtcR 1
Transcriptional regulatory protein XylR 1
Transcriptional regulatory protein ZraR 5
Uncharacterized protein in HyuA 5'region (Fragment) 1

Protein length

Min length 328
Max length 338
Mean length (sd) 330.3 (4.1)
Median length 328.0

Protein length distribution