Orthogroup:group_2850



Homologs in group_2850

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_10630 FBDBKF_10630 Morganella morganii S1 rocR RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains
EHELCC_14965 EHELCC_14965 Morganella morganii S2 rocR RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains
NLDBIP_14795 NLDBIP_14795 Morganella morganii S4 rocR RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains
LHKJJB_14550 LHKJJB_14550 Morganella morganii S3 rocR RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains
HKOGLL_13170 HKOGLL_13170 Morganella morganii S5 rocR RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains
F4V73_RS14340 F4V73_RS14340 Morganella psychrotolerans - sigma 54-interacting transcriptional regulator

Distribution of group_2850 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2850 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2850

Orthogroup content: 6 members

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This page summarizes the annotation of all members of the orthologous group group_2850.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rocR 5
2 - 1

Product

# Product Occurence
1 RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains 5
2 sigma 54-interacting transcriptional regulator 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3829 6 KT Transcription (K)
Signal transduction mechanisms (T)
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03721 6 transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00158 6 Sigma-54 interaction domain
PF00989 6 PAS fold
PF18024 6 Helix-turn-helix domain

Annotations of the 154 SwissProt hits

Annotation Number of occurrences
Acetoin catabolism regulatory protein 1
Acetoin dehydrogenase operon transcriptional activator AcoR 1
Alginate biosynthesis transcriptional regulatory protein AlgB 3
Anaerobic nitric oxide reductase transcription regulator NorR 52
C4-dicarboxylate transport transcriptional regulatory protein DctD 3
DNA-binding transcriptional activator HyfR 1
DNA-binding transcriptional regulator NtrC 10
Formate hydrogenlyase transcriptional activator 2
Formate hydrogenlyase transcriptional activator FhlA 1
Glycerol metabolism operon regulatory protein 1
HTH-type transcriptional regulatory protein TyrR 6
Hydrogenase transcriptional regulatory protein HoxA 2
Hydrogenase transcriptional regulatory protein HupR1 1
Limonene hydroxylase 1
Luminescence regulatory protein LuxO 2
Nif-specific regulatory protein 16
Nitric oxide reductase transcription regulator NorR1 1
Nitric oxide reductase transcription regulator NorR2 1
Nitrogen assimilation regulatory protein NtrX 1
Nitrogen fixation protein AnfA 1
Nitrogen fixation protein VnfA 1
PTS-dependent dihydroxyacetone kinase operon regulatory protein 1
Pathogenicity locus probable regulatory protein HrpR 1
Pathogenicity locus probable regulatory protein HrpS 2
Pathogenicity locus probable regulatory protein WtsA 1
Phenol regulator MopR 1
Propionate catabolism operon regulatory protein 2
Psp operon transcriptional activator 1
Putative response regulator NtrX-like 5
Putative sigma L-dependent transcriptional regulator YplP 1
Putative sigma L-dependent transcriptional regulator YqiR 1
Putative transcriptional regulatory protein y4pA 1
Putative uric acid sigma-54-dependent transcriptional regulator UacR 1
Regulatory protein AtoC 1
Regulatory protein LuxO 5
Response regulator protein FleR 1
Response regulator protein PilR 1
Sigma54-dependent transcriptional activator SfnR 1
Sigma54-dependent transcriptional regulator SfnR 1
Signal-transduction and transcriptional-control protein 1
Transcriptional activator RocR 1
Transcriptional regulator FleQ 1
Transcriptional regulator VasH 1
Transcriptional regulatory protein DagR 1
Transcriptional regulatory protein FlbD 1
Transcriptional regulatory protein FlgR 1
Transcriptional regulatory protein GlrR 1
Transcriptional regulatory protein LevR 1
Transcriptional regulatory protein QseF 1
Transcriptional regulatory protein RtcR 1
Transcriptional regulatory protein XylR 1
Transcriptional regulatory protein ZraR 5
Uncharacterized protein in HyuA 5'region (Fragment) 1

Protein length

Min length 545
Max length 548
Mean length (sd) 547.5 (1.2)
Median length 548.0

Protein length distribution