PF12728


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12728, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 10 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12728
Description Helix-turn-helix domain

Occurence in the database

PF12728 is associated with 10 different proteins (see tab "Protein list" and "Profile")
The 10 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2949 FBDBKF_15620 56021 56365 -1 alpA Phage transcriptional regulator, AlpA Morganella morganii S1
1 group_3773 FBDBKF_15630 58114 58314 -1 Transcriptional regulator Morganella morganii S1
2 group_2949 EHELCC_15980 55321 55665 -1 alpA Phage transcriptional regulator, AlpA Morganella morganii S2
3 group_3773 NLDBIP_16380 23049 23249 1 Transcriptional regulator Morganella morganii S4
4 group_2949 NLDBIP_16390 24998 25342 1 alpA Phage transcriptional regulator, AlpA Morganella morganii S4
5 group_2949 LHKJJB_16415 55321 55665 -1 alpA Phage transcriptional regulator, AlpA Morganella morganii S3
6 group_2949 HKOGLL_16185 55321 55665 -1 alpA Phage transcriptional regulator, AlpA Morganella morganii S5
7 group_3848 F4V73_RS10105 129542 130183 -1 helix-turn-helix domain-containing protein Morganella psychrotolerans
8 group_4545 PMI_RS11500 2533734 2534186 1 helix-turn-helix domain-containing protein Proteus mirabilis HI4320
9 group_2949 PMI_RS15555 3461648 3461830 -1 helix-turn-helix domain-containing protein Proteus mirabilis HI4320