Homologs in group_3848

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS07720 PMI_RS07720 28.2 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein

Distribution of the homologs in the orthogroup group_3848

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3848

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10105
Feature type CDS
Gene -
Product helix-turn-helix domain-containing protein
Location 129542 - 130183 (strand: -1)
Length 642 (nucleotides) / 213 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3848
Orthogroup size 2
N. genomes 2

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Genomic region

Domains

PF12728 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2452 Mobilome: prophages, transposons (X) X Predicted site-specific integrase-resolvase

Protein Sequence

MHTHSAERERKKPAVSFHANEVLASRVSHLVSSLFADFDDKSLVSEIMVLEDLELLVYVVNAYLQKKTRMNDREMEMFKARIQATVRFYQKLDKLGGTVKAKEVSELLGVTRQTVNNHVNKGKLIAVRRGGDYLFPVFQFKGSEMLPHLDDILLCLPPETDATARVSFLTSPVRVDNKNPVKTPLEILRDNPSDEKITLLRREATLFANQIAS

Flanking regions ( +/- flanking 50bp)

TAAACGTAAACCACCCCGCTTTGTCACATGCGGAAAAATGGGAGGATCGTATGCATACACACAGTGCTGAAAGAGAAAGAAAAAAGCCGGCTGTTTCATTTCATGCAAATGAGGTGCTGGCAAGCCGCGTCAGTCATCTTGTTTCATCCCTTTTTGCTGATTTTGACGATAAATCTCTGGTATCTGAAATCATGGTACTGGAAGACCTTGAGCTGCTGGTTTACGTTGTAAATGCTTATCTGCAAAAGAAAACGCGGATGAATGATCGCGAAATGGAGATGTTTAAAGCCAGAATTCAGGCTACAGTCAGATTTTATCAGAAGCTGGATAAGCTGGGCGGTACTGTAAAAGCGAAAGAGGTCAGTGAGTTGCTGGGAGTGACACGGCAAACTGTTAATAATCATGTGAACAAAGGCAAGCTGATTGCAGTACGCCGTGGCGGTGATTATCTGTTCCCTGTCTTTCAGTTTAAGGGGTCGGAAATGCTCCCTCATCTGGACGATATTCTGCTGTGTCTGCCGCCGGAAACGGATGCAACCGCACGGGTTTCATTCCTGACCAGCCCGGTTCGCGTTGATAATAAAAATCCGGTAAAAACACCGCTTGAGATCCTCCGTGATAATCCTTCCGATGAAAAAATAACACTGCTACGCCGCGAGGCTACGCTTTTCGCCAATCAGATAGCATCATAAAAGGGTTCACCGGCCCGGACAGACCGGTGAACCATAACAGCATTAAAGCG