PF12704


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12704, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 22 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12704
Description MacB-like periplasmic core domain

Occurence in the database

PF12704 is associated with 22 different proteins (see tab "Protein list" and "Profile")
The 22 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1211 FBDBKF_07050 73583 75529 1 macB macrolide ABC transporter ATP-binding protein/permease MacB Morganella morganii S1
1 group_1948 FBDBKF_14620 20329 21576 -1 lolE lipoprotein-releasing ABC transporter permease subunit LolE Morganella morganii S1
2 group_382 FBDBKF_14630 22261 23463 -1 lolC lipoprotein-releasing ABC transporter permease subunit LolC Morganella morganii S1
3 group_1211 EHELCC_03920 110657 112603 -1 macB macrolide ABC transporter ATP-binding protein/permease MacB Morganella morganii S2
4 group_1948 EHELCC_15425 50405 51652 -1 lolE lipoprotein-releasing ABC transporter permease subunit LolE Morganella morganii S2
5 group_382 EHELCC_15435 52337 53539 -1 lolC lipoprotein-releasing ABC transporter permease subunit LolC Morganella morganii S2
6 group_1211 NLDBIP_03920 110453 112399 -1 macB macrolide ABC transporter ATP-binding protein/permease MacB Morganella morganii S4
7 group_1948 NLDBIP_15955 50405 51652 -1 lolE lipoprotein-releasing ABC transporter permease subunit LolE Morganella morganii S4
8 group_382 NLDBIP_15965 52337 53539 -1 lolC lipoprotein-releasing ABC transporter permease subunit LolC Morganella morganii S4
9 group_1211 LHKJJB_09750 110567 112513 -1 macB macrolide ABC transporter ATP-binding protein/permease MacB Morganella morganii S3
10 group_382 LHKJJB_15875 63147 64349 1 lolC lipoprotein-releasing ABC transporter permease subunit LolC Morganella morganii S3
11 group_1948 LHKJJB_15885 65034 66281 1 lolE lipoprotein-releasing ABC transporter permease subunit LolE Morganella morganii S3
12 group_1211 HKOGLL_09225 78539 80485 1 macB macrolide ABC transporter ATP-binding protein/permease MacB Morganella morganii S5
13 group_382 HKOGLL_14995 62359 63561 1 lolC lipoprotein-releasing ABC transporter permease subunit LolC Morganella morganii S5
14 group_1948 HKOGLL_15005 64246 65493 1 lolE lipoprotein-releasing ABC transporter permease subunit LolE Morganella morganii S5
15 group_1211 F4V73_RS01235 261156 263102 1 macB macrolide ABC transporter ATP-binding protein/permease MacB Morganella psychrotolerans
16 group_1948 F4V73_RS07415 1548574 1549821 -1 lolE lipoprotein-releasing ABC transporter permease subunit LolE Morganella psychrotolerans
17 group_382 F4V73_RS07425 1550506 1551708 -1 lolC lipoprotein-releasing ABC transporter permease subunit LolC Morganella psychrotolerans
18 group_1211 PMI_RS03380 746233 748176 1 macB macrolide ABC transporter ATP-binding protein/permease MacB Proteus mirabilis HI4320
19 group_382 PMI_RS04310 968901 970103 1 lolC lipoprotein-releasing ABC transporter permease subunit LolC Proteus mirabilis HI4320
20 group_1948 PMI_RS04320 970800 972047 1 lolE lipoprotein-releasing ABC transporter permease subunit LolE Proteus mirabilis HI4320
21 group_1776 PMI_RS10670 2345830 2348271 -1 ybbP putative ABC transporter permease subunit YbbP Proteus mirabilis HI4320