Homologs in group_1776

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12955 FBDBKF_12955 61.7 Morganella morganii S1 ybbP putative ABC transporter permease subunit YbbP
EHELCC_06270 EHELCC_06270 61.7 Morganella morganii S2 ybbP putative ABC transporter permease subunit YbbP
NLDBIP_06590 NLDBIP_06590 61.7 Morganella morganii S4 ybbP putative ABC transporter permease subunit YbbP
LHKJJB_03470 LHKJJB_03470 61.7 Morganella morganii S3 ybbP putative ABC transporter permease subunit YbbP
HKOGLL_06945 HKOGLL_06945 61.7 Morganella morganii S5 ybbP putative ABC transporter permease subunit YbbP
F4V73_RS16140 F4V73_RS16140 62.0 Morganella psychrotolerans ybbP putative ABC transporter permease subunit YbbP

Distribution of the homologs in the orthogroup group_1776

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1776

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77504 0.0 884 57 2 812 3 ybbP Uncharacterized ABC transporter permease YbbP Escherichia coli (strain K12)
P44252 1.78e-05 51 26 6 223 3 lolC Lipoprotein-releasing system transmembrane protein LolC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10670
Feature type CDS
Gene ybbP
Product putative ABC transporter permease subunit YbbP
Location 2345830 - 2348271 (strand: -1)
Length 2442 (nucleotides) / 813 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1776
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02687 FtsX-like permease family
PF12704 MacB-like periplasmic core domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3127 Secondary metabolites biosynthesis, transport and catabolism (Q) Q Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02004 putative ABC transport system permease protein - -

Protein Sequence

MIWRWFWREWRSPALLIVWLSLALAVACVLALGRIGDRIDKSIYAQSRDLIAGDLVLRASYPVDENWLAEAKRMGLTLSRQMQFTTMSYAPEGDTPQLALVKAADNLYPLYGELETQPVGLKAEKGTALVDARLLALLGIKVGDNIDVGDATFTISGVLVQEPDSGFNPFQIAPRILINLADVEATGAVQPGSRLTYRYMFAGNEALIDEYQQRFDPLLKPDQRWNSLKQDNGALSQSMERAKNFLLLSALLTLLLAISAVAVSMTHYCRSRHTLIAVLKTLGADNHALRKWIIGQWGVIIVAAIVVGSLVGWGFELVLLQILAPVLPKSLPDASFMPWLWSVGSLLLIALLTGLRPYHQLMSTQPSRVLRSGTTAPSWPLRYYLPIVALIVVGALTLFAGTGVLLWSILLGIVVIAFLLGVIGWLGLWLLKQFKFKQLSARLAVTRLLRQPFQTMTQLAAFSLSFMLLTLLVLLQGDLLEKWQQQLPEDSPNYFLINMSKPQVQQINTLLATYHVAPTDAYPVVLARLTAINDHNAKVWADARDAGNNTVRRELNLTWHSELPKDNVIVEGSWPPVGNGVSIDQGVAQKLEIKLGDELTFVGDTREFKSVVTSIRHVDWENMRPNFFFIFAEEGLSNQPEKWMSSFYYNGDGSLITALNRQFPTVSVLDTGALIQQVQQILQQVSRALEIMVGLVMLCGALLLVAQIQVGMTQRRIELVVYRTLGASKSLLRRTLWAEFALLGLMAGLAAAIGAEVALGLLQKSVFNFPWQPQWMMWIVVPALAAVLLSLCGSILGVRLLQDKGQYRRIQGE

Flanking regions ( +/- flanking 50bp)

CGTTGTCAGCGAAGATTACGTCTTGTTGATGGGCAACTTAAGGAGGAGTCATGATCTGGCGTTGGTTTTGGCGTGAGTGGCGCTCGCCGGCTTTATTAATTGTTTGGCTCTCTTTAGCGCTGGCGGTGGCTTGTGTGCTGGCGTTAGGGCGTATTGGTGATCGCATTGATAAAAGTATTTATGCTCAAAGTCGTGATCTTATCGCCGGTGATTTAGTGCTACGCGCCTCGTATCCTGTTGATGAAAATTGGCTAGCTGAAGCTAAAAGAATGGGGCTAACACTTAGTCGTCAAATGCAATTTACCACCATGTCTTATGCCCCAGAAGGTGATACTCCTCAATTGGCGTTGGTAAAAGCCGCGGATAACTTATATCCACTCTATGGTGAGCTAGAAACTCAGCCTGTAGGGCTAAAAGCGGAGAAAGGCACGGCGTTAGTGGATGCAAGGTTACTGGCGCTTTTGGGGATCAAGGTTGGTGATAATATTGATGTCGGTGATGCCACTTTTACAATTAGCGGTGTATTAGTTCAAGAGCCTGATAGTGGTTTTAATCCTTTTCAAATTGCCCCGCGTATTTTAATTAATCTTGCTGATGTTGAAGCGACTGGTGCCGTTCAGCCGGGAAGCCGCTTAACTTACCGTTATATGTTTGCGGGTAATGAAGCATTAATTGATGAATACCAACAACGCTTTGATCCCTTATTAAAACCGGATCAGCGTTGGAATAGCTTAAAACAAGATAATGGTGCGCTATCTCAATCAATGGAGAGAGCAAAAAACTTTTTACTATTATCTGCATTATTAACACTACTATTGGCGATTTCTGCCGTTGCGGTTTCAATGACACATTATTGCCGTAGTCGACATACGCTAATTGCGGTATTAAAAACCTTAGGTGCTGATAATCATGCATTACGTAAATGGATTATAGGTCAGTGGGGTGTGATTATTGTTGCGGCTATCGTGGTCGGCTCACTGGTCGGTTGGGGCTTTGAATTAGTATTGTTGCAGATTTTAGCACCGGTATTACCAAAAAGTTTACCTGATGCGAGCTTTATGCCATGGCTATGGTCAGTTGGCTCTTTACTACTCATCGCGTTATTGACGGGTTTACGCCCTTATCACCAATTAATGTCAACGCAACCTTCCCGCGTGTTGAGAAGTGGTACTACGGCACCTAGTTGGCCACTACGTTATTATTTACCCATTGTTGCATTGATTGTTGTTGGCGCTTTAACTCTGTTTGCCGGAACGGGTGTTTTATTGTGGTCTATTTTATTAGGTATCGTCGTCATTGCTTTCTTGCTCGGCGTGATTGGTTGGCTTGGATTATGGCTTTTAAAGCAATTTAAATTTAAGCAATTGAGTGCCCGTTTAGCGGTGACACGTTTATTACGCCAGCCTTTCCAAACCATGACGCAATTAGCCGCTTTTTCATTATCCTTTATGCTATTGACGCTATTGGTTTTGCTGCAAGGGGATTTATTGGAAAAATGGCAACAGCAGTTACCTGAAGATAGTCCTAACTATTTCTTGATTAATATGTCAAAGCCTCAGGTACAGCAGATTAATACATTATTAGCCACTTATCATGTGGCACCGACAGATGCTTATCCGGTTGTGTTAGCACGTTTAACAGCGATTAATGATCACAATGCGAAAGTGTGGGCAGATGCACGGGATGCGGGGAATAATACCGTACGAAGAGAGCTTAATTTAACGTGGCACAGTGAACTTCCTAAAGATAATGTTATTGTCGAAGGCTCATGGCCTCCCGTCGGTAATGGCGTTTCAATCGATCAGGGGGTTGCACAAAAGTTAGAAATAAAGCTGGGGGATGAGCTAACTTTTGTTGGTGATACTCGCGAGTTTAAATCTGTTGTCACCAGCATTCGCCATGTTGATTGGGAAAATATGCGACCAAATTTCTTCTTTATTTTCGCAGAAGAAGGGCTAAGCAATCAGCCTGAAAAATGGATGAGCAGTTTTTATTACAATGGTGATGGAAGTTTGATCACCGCATTAAATCGACAATTTCCTACGGTCAGTGTGCTAGATACGGGGGCATTAATTCAGCAAGTTCAGCAGATCTTACAGCAAGTCAGCCGAGCATTAGAAATTATGGTTGGATTAGTTATGCTGTGTGGGGCATTGCTATTAGTGGCACAAATTCAAGTCGGTATGACACAACGTCGTATCGAGTTGGTGGTTTATCGAACATTAGGCGCGAGTAAGTCACTATTAAGACGCACGCTTTGGGCGGAGTTTGCCTTATTAGGGTTAATGGCCGGTTTAGCTGCAGCGATAGGGGCTGAAGTTGCATTAGGGTTGTTGCAAAAATCGGTATTTAATTTCCCATGGCAACCACAATGGATGATGTGGATAGTTGTTCCCGCTCTTGCCGCCGTATTACTTTCACTTTGTGGCAGTATTTTAGGGGTTAGGCTATTACAAGATAAAGGCCAATATCGTCGTATTCAGGGAGAATAGTCGCCATTAGTTATCTAGTTATCATTAAATGAAGTGATACGTGATATTGA