Orthogroup:group_1985


Homologs in group_1985

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14885 FBDBKF_14885 Morganella morganii S1 rsuA 16S rRNA pseudouridine(516) synthase RsuA
EHELCC_15690 EHELCC_15690 Morganella morganii S2 rsuA 16S rRNA pseudouridine(516) synthase RsuA
NLDBIP_16220 NLDBIP_16220 Morganella morganii S4 rsuA 16S rRNA pseudouridine(516) synthase RsuA
LHKJJB_15620 LHKJJB_15620 Morganella morganii S3 rsuA 16S rRNA pseudouridine(516) synthase RsuA
HKOGLL_14740 HKOGLL_14740 Morganella morganii S5 rsuA 16S rRNA pseudouridine(516) synthase RsuA
F4V73_RS07685 F4V73_RS07685 Morganella psychrotolerans rsuA 16S rRNA pseudouridine(516) synthase RsuA
PMI_RS04065 PMI_RS04065 Proteus mirabilis HI4320 rsuA 16S rRNA pseudouridine(516) synthase RsuA

Distribution of group_1985 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1985 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1985

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1985.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rsuA 7

Product

# Product Occurence
1 16S rRNA pseudouridine(516) synthase RsuA 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1187 7 J Translation, ribosomal structure and biogenesis (J) Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K06183 7 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00849 7 RNA pseudouridylate synthase
PF01479 7 S4 domain

Annotations of the 74 SwissProt hits

Annotation Number of occurrences
Dual-specificity RNA pseudouridine synthase RluF 6
Putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 1
Ribosomal large subunit pseudouridine synthase B 21
Ribosomal large subunit pseudouridine synthase E 15
Ribosomal small subunit pseudouridine synthase A 13
Uncharacterized RNA pseudouridine synthase BB_0129 1
Uncharacterized RNA pseudouridine synthase HP_1459 1
Uncharacterized RNA pseudouridine synthase ML1370 1
Uncharacterized RNA pseudouridine synthase MT1751.1 1
Uncharacterized RNA pseudouridine synthase Mb1738 1
Uncharacterized RNA pseudouridine synthase RBE_0321 1
Uncharacterized RNA pseudouridine synthase RC0807 1
Uncharacterized RNA pseudouridine synthase RF_0863 1
Uncharacterized RNA pseudouridine synthase RP544 1
Uncharacterized RNA pseudouridine synthase RT0532 1
Uncharacterized RNA pseudouridine synthase Rv1711 1
Uncharacterized RNA pseudouridine synthase YtzG 1
Uncharacterized RNA pseudouridine synthase aq_1464 1
Uncharacterized RNA pseudouridine synthase aq_1758 1
Uncharacterized RNA pseudouridine synthase aq_554 1
Uncharacterized RNA pseudouridine synthase jhp_1352 1
Uncharacterized RNA pseudouridine synthase slr0361 1
Uncharacterized RNA pseudouridine synthase slr0612 1

Protein length

Min length 231
Max length 234
Mean length (sd) 231.4 (1.1)
Median length 231.0

Protein length distribution