Homologs in group_1948

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14620 FBDBKF_14620 89.6 Morganella morganii S1 lolE lipoprotein-releasing ABC transporter permease subunit LolE
EHELCC_15425 EHELCC_15425 89.6 Morganella morganii S2 lolE lipoprotein-releasing ABC transporter permease subunit LolE
NLDBIP_15955 NLDBIP_15955 89.6 Morganella morganii S4 lolE lipoprotein-releasing ABC transporter permease subunit LolE
LHKJJB_15885 LHKJJB_15885 89.6 Morganella morganii S3 lolE lipoprotein-releasing ABC transporter permease subunit LolE
HKOGLL_15005 HKOGLL_15005 89.6 Morganella morganii S5 lolE lipoprotein-releasing ABC transporter permease subunit LolE
PMI_RS04320 PMI_RS04320 68.9 Proteus mirabilis HI4320 lolE lipoprotein-releasing ABC transporter permease subunit LolE

Distribution of the homologs in the orthogroup group_1948

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1948

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P75958 0.0 529 61 0 413 1 lolE Lipoprotein-releasing system transmembrane protein LolE Escherichia coli (strain K12)
P44250 9.06e-141 410 47 3 408 3 lolE Lipoprotein-releasing system transmembrane protein LolE Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P57062 3.09e-73 238 31 3 404 3 lolC Lipoprotein-releasing system transmembrane protein LolC Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
P57061 3.4e-73 238 31 3 404 3 lolC Lipoprotein-releasing system transmembrane protein LolC Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)
Q9PEF2 5.99e-73 237 33 3 409 3 lolC Lipoprotein-releasing system transmembrane protein LolC Xylella fastidiosa (strain 9a5c)
Q87EF5 6.23e-72 234 33 3 409 3 lolC Lipoprotein-releasing system transmembrane protein LolC Xylella fastidiosa (strain Temecula1 / ATCC 700964)
Q8K9N7 1.42e-62 210 26 3 416 3 BUsg_286 Uncharacterized membrane protein BUsg_286 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P0ADC3 4.41e-38 145 29 10 414 1 lolC Lipoprotein-releasing system transmembrane protein LolC Escherichia coli (strain K12)
P0ADC4 4.41e-38 145 29 10 414 3 lolC Lipoprotein-releasing system transmembrane protein LolC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ADC5 4.41e-38 145 29 10 414 3 lolC Lipoprotein-releasing system transmembrane protein LolC Escherichia coli O157:H7
P44252 2.72e-36 140 30 12 427 3 lolC Lipoprotein-releasing system transmembrane protein LolC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8K9N8 6.45e-21 97 23 12 374 3 lolC Lipoprotein-releasing system transmembrane protein LolC Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57382 4.52e-20 94 23 12 428 3 lolC Lipoprotein-releasing system transmembrane protein LolC Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q58902 1.03e-07 57 26 2 156 3 MJ1507 Uncharacterized ABC transporter permease MJ1507 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q58207 2.48e-05 49 26 4 134 3 MJ0797 Uncharacterized ABC transporter permease MJ0797 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O35005 4.05e-05 49 27 7 138 2 ytrF ABC transporter permease YtrF Bacillus subtilis (strain 168)
Q8DQH3 0.000536 45 40 0 60 1 ftsX Cell division protein FtsX Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
Q04LE4 0.000576 45 40 0 60 1 ftsX Cell division protein FtsX Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07415
Feature type CDS
Gene lolE
Product lipoprotein-releasing ABC transporter permease subunit LolE
Location 1548574 - 1549821 (strand: -1)
Length 1248 (nucleotides) / 415 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1948
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF02687 FtsX-like permease family
PF12704 MacB-like periplasmic core domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4591 Cell wall/membrane/envelope biogenesis (M) M ABC-type transport system involved in lipoprotein release, permease component LolC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09808 lipoprotein-releasing system permease protein ABC transporters -

Protein Sequence

MNALPLSLLTALRFSKGRKRAGMVSFISVISTLGITLGVAVLIIGLSAMNGFERELENRVLSVVPQGQVSTVEQPFDNWAQSLLRIQKTPGVVAASPYIEFTGLAEKGTKLQAMQLMGVDPQTQQKVSGLADFVADNAWADFRAGQNQIILGDGAAKTLGVKPGEWLTIMIPNNDSSERLLQPKRIRLQVAGIFRLSGMLDHRLALIPLQDAQQYLDYGDGVTGIEIRVNDVFKADAIVLQAAEASREHVYYKSWINEYGYMYSDIQMVRSIMYLAMILVIGVACFNIVSTLIIAVKDKSSDIAILRTLGAKDSLIRAIFLWYGLMTGMVGCISGAILGTLAALNLTPLIRGVEYLTGHKLLSGDVYFIDFLPSQLQLTDLVYVVLTTIVLSLIASWYPARRACRLEPARILSGQ

Flanking regions ( +/- flanking 50bp)

CAGATGGAGATGCGCGACGGGATCCTTAACCCGCAGCCGGAGACGGCAGTATGAATGCATTACCGCTGTCATTACTGACTGCGCTGCGCTTCAGTAAAGGGCGGAAACGGGCGGGGATGGTATCGTTTATCTCGGTTATTTCGACCCTCGGAATAACGCTGGGCGTGGCGGTGCTGATTATCGGGCTGAGTGCGATGAACGGGTTTGAGCGCGAGCTGGAAAACCGCGTGCTGTCTGTTGTACCGCAGGGGCAGGTTTCCACTGTTGAACAGCCGTTTGACAACTGGGCGCAAAGCTTATTGCGCATACAAAAGACCCCGGGCGTCGTGGCAGCGAGTCCCTATATTGAGTTTACCGGGCTTGCGGAAAAAGGCACAAAACTTCAGGCAATGCAGCTGATGGGGGTTGATCCGCAGACACAGCAGAAAGTCAGCGGGCTGGCGGATTTTGTTGCAGATAATGCCTGGGCGGATTTCAGGGCAGGTCAGAATCAGATAATCCTCGGCGATGGTGCGGCAAAAACACTCGGTGTCAAACCCGGTGAATGGCTGACTATCATGATCCCGAATAATGACAGCAGCGAGCGCCTGCTACAGCCGAAACGTATCCGTTTACAGGTTGCGGGCATTTTTCGTCTCAGTGGTATGCTCGATCACCGCCTGGCGTTGATCCCGCTACAGGATGCACAACAATATCTGGATTATGGTGACGGCGTCACCGGTATTGAAATCCGGGTAAATGATGTCTTTAAAGCAGATGCAATAGTATTACAGGCCGCTGAAGCCAGCCGCGAACATGTGTATTACAAAAGTTGGATCAATGAATACGGTTATATGTACAGCGATATACAAATGGTGCGCAGTATTATGTATCTGGCGATGATCCTTGTTATCGGCGTGGCGTGCTTTAATATTGTTTCCACCCTGATTATTGCCGTAAAAGACAAAAGCAGTGATATTGCCATTTTGCGCACGTTAGGTGCAAAAGACAGCCTGATCCGCGCTATTTTTCTCTGGTACGGGCTGATGACCGGAATGGTCGGCTGTATCAGCGGCGCAATACTCGGTACATTGGCGGCATTGAATCTGACACCGCTTATCCGTGGTGTGGAATATCTGACCGGACATAAACTCTTATCCGGGGATGTCTATTTTATTGATTTTCTGCCGTCACAACTGCAACTGACGGATCTTGTATATGTGGTATTGACCACGATTGTACTGAGTCTGATTGCCAGCTGGTATCCGGCACGACGTGCCTGCCGCCTGGAGCCTGCACGTATTCTGAGCGGGCAGTAAAACCGCAGAATACCGCAGAATAAGTAATGACGTTGGATCCGTACAACAAA