PF04073


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04073, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 38 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04073
Description Aminoacyl-tRNA editing domain

Occurence in the database

PF04073 is associated with 38 different proteins (see tab "Protein list" and "Profile")
The 38 proteins are classified into 6 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2505 FBDBKF_01865 61185 61676 -1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC Morganella morganii S1
1 group_2651 FBDBKF_04465 86967 87461 -1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC Morganella morganii S1
2 group_1045 FBDBKF_05910 4983 6704 1 proS proline--tRNA ligase Morganella morganii S1
3 group_1192 FBDBKF_06890 44019 44507 -1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC Morganella morganii S1
4 group_1786 FBDBKF_13025 111126 111605 1 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK Morganella morganii S1
5 group_3584 FBDBKF_19560 18988 19458 1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC Morganella morganii S1
6 group_2505 EHELCC_02335 449005 449496 -1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC Morganella morganii S2
7 group_1192 EHELCC_04080 141649 142167 1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC Morganella morganii S2
8 group_2651 EHELCC_05755 146424 146918 -1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC Morganella morganii S2
9 group_1786 EHELCC_06340 281158 281637 1 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK Morganella morganii S2
10 group_1045 EHELCC_08955 5555 7276 1 proS proline--tRNA ligase Morganella morganii S2
11 group_3584 EHELCC_16505 18988 19458 1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC Morganella morganii S2
12 group_2505 NLDBIP_01125 230640 231131 1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC Morganella morganii S4
13 group_1192 NLDBIP_04080 141445 141963 1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC Morganella morganii S4
14 group_2651 NLDBIP_06075 187489 187983 -1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC Morganella morganii S4
15 group_1786 NLDBIP_06660 322223 322702 1 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK Morganella morganii S4
16 group_1045 NLDBIP_09335 5555 7276 1 proS proline--tRNA ligase Morganella morganii S4
17 group_3584 NLDBIP_16715 18988 19458 1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC Morganella morganii S4
18 group_2505 LHKJJB_00910 161554 162045 -1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC Morganella morganii S3
19 group_2651 LHKJJB_02955 165013 165507 -1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC Morganella morganii S3
20 group_1786 LHKJJB_03540 299747 300226 1 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK Morganella morganii S3
21 group_1045 LHKJJB_08420 209962 211683 -1 proS proline--tRNA ligase Morganella morganii S3
22 group_1192 LHKJJB_09910 141559 142077 1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC Morganella morganii S3
23 group_3584 LHKJJB_16755 49052 49522 -1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC Morganella morganii S3
24 group_2505 HKOGLL_00950 167065 167556 -1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC Morganella morganii S5
25 group_2651 HKOGLL_06430 86877 87371 -1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC Morganella morganii S5
26 group_1786 HKOGLL_07015 221611 222090 1 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK Morganella morganii S5
27 group_1045 HKOGLL_07970 209962 211683 -1 proS proline--tRNA ligase Morganella morganii S5
28 group_1192 HKOGLL_09065 48975 49493 -1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC Morganella morganii S5
29 group_3584 HKOGLL_18860 18988 19458 1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC Morganella morganii S5
30 group_1192 F4V73_RS01075 228947 229438 -1 YbaK/prolyl-tRNA synthetase associated domain-containing protein Morganella psychrotolerans
31 group_2505 F4V73_RS04210 891070 891561 -1 YbaK/EbsC family protein Morganella psychrotolerans
32 group_2651 F4V73_RS08915 1850393 1850887 -1 YbaK/EbsC family protein Morganella psychrotolerans
33 group_1045 F4V73_RS15985 206750 208471 -1 proS proline--tRNA ligase Morganella psychrotolerans
34 group_1786 F4V73_RS16210 51608 52087 1 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK Morganella psychrotolerans
35 group_1192 PMI_RS03230 714932 715429 -1 YbaK/prolyl-tRNA synthetase associated domain-containing protein Proteus mirabilis HI4320
36 group_1786 PMI_RS10725 2359247 2359726 1 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK Proteus mirabilis HI4320
37 group_1045 PMI_RS11180 2459222 2460937 1 proS proline--tRNA ligase Proteus mirabilis HI4320