Homologs in group_47

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12 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01865 FBDBKF_01865 44.4 Morganella morganii S1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
FBDBKF_06890 FBDBKF_06890 87.7 Morganella morganii S1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
EHELCC_02335 EHELCC_02335 44.4 Morganella morganii S2 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
EHELCC_04080 EHELCC_04080 87.7 Morganella morganii S2 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
NLDBIP_01125 NLDBIP_01125 44.4 Morganella morganii S4 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
NLDBIP_04080 NLDBIP_04080 87.7 Morganella morganii S4 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
LHKJJB_00910 LHKJJB_00910 44.4 Morganella morganii S3 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
LHKJJB_09910 LHKJJB_09910 87.7 Morganella morganii S3 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
HKOGLL_00950 HKOGLL_00950 44.4 Morganella morganii S5 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
HKOGLL_09065 HKOGLL_09065 87.7 Morganella morganii S5 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
F4V73_RS04210 F4V73_RS04210 45.6 Morganella psychrotolerans - YbaK/EbsC family protein
PMI_RS03230 PMI_RS03230 70.6 Proteus mirabilis HI4320 - YbaK/prolyl-tRNA synthetase associated domain-containing protein

Distribution of the homologs in the orthogroup group_47

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_47

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P64483 1.1e-67 206 64 0 154 1 proXp-y Multifunctional Ser/Thr-tRNA deacylase ProXp-y Escherichia coli (strain K12)
P64484 1.1e-67 206 64 0 154 3 proXp-y Multifunctional Ser/Thr-tRNA deacylase ProXp-y Escherichia coli O157:H7
Q9L4Q7 7.42e-08 52 28 4 160 1 proX Prolyl-tRNA editing protein ProX Acetoanaerobium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / CCUG 9281 / NCIMB 10654 / HF)
P0AAR4 9.02e-06 46 25 4 154 3 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK Shigella flexneri
P0AAR3 9.02e-06 46 25 4 154 1 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK Escherichia coli (strain K12)
P37174 0.000267 42 24 3 135 3 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01075
Feature type CDS
Gene -
Product YbaK/prolyl-tRNA synthetase associated domain-containing protein
Location 228947 - 229438 (strand: -1)
Length 492 (nucleotides) / 163 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000001
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_47
Orthogroup size 13
N. genomes 7

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Genomic region

Domains

PF04073 Aminoacyl-tRNA editing domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2606 Translation, ribosomal structure and biogenesis (J) J Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K19055 Ala-tRNA(Pro) deacylase [EC:3.1.1.-] - -

Protein Sequence

MINPVFEKLTARLDENHARYRVVEHASAGKTEEVAKARGTHHGQGAKALVCHVKGNGLRQYVLAILPSDQQADLQALAKKVGGTRASLASPKETTELTNCVFGAIPPFSFHPGLRLVADPMLFERFSELAFNAGSLECSVILNTQDYQRIADPDIMSFVRREL

Flanking regions ( +/- flanking 50bp)

CCCATTATAATAAGCTGGAGTGCAGCAACAGAGATAAAGGGATAATAAGTATGATCAACCCTGTTTTTGAGAAACTGACAGCCCGGCTGGATGAAAACCACGCCCGCTACCGTGTGGTTGAGCATGCATCCGCCGGAAAAACCGAAGAGGTTGCCAAAGCCCGCGGAACGCACCACGGACAGGGTGCTAAAGCCCTTGTATGTCATGTTAAAGGAAACGGATTGCGTCAGTATGTCCTTGCCATTTTGCCGTCAGATCAACAGGCAGATTTACAGGCACTGGCAAAAAAGGTCGGCGGCACCCGTGCCTCTCTCGCCAGTCCGAAAGAGACAACTGAACTGACGAACTGTGTTTTTGGTGCTATTCCGCCGTTCAGTTTTCATCCCGGTCTCCGCCTGGTTGCTGACCCGATGCTGTTTGAACGTTTCAGTGAACTGGCGTTTAATGCCGGCAGCCTTGAGTGCTCTGTTATTTTAAATACTCAGGATTATCAGCGGATTGCTGATCCTGATATTATGTCGTTTGTCCGTCGTGAACTGTAATTTTTGCTTGGGAAGGCGCTTATGCAGGATGAACTTTTAGATACTGTTTA