Orthogroup:group_47


Homologs in group_47

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13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01865 FBDBKF_01865 Morganella morganii S1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
FBDBKF_06890 FBDBKF_06890 Morganella morganii S1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
EHELCC_02335 EHELCC_02335 Morganella morganii S2 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
EHELCC_04080 EHELCC_04080 Morganella morganii S2 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
NLDBIP_01125 NLDBIP_01125 Morganella morganii S4 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
NLDBIP_04080 NLDBIP_04080 Morganella morganii S4 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
LHKJJB_00910 LHKJJB_00910 Morganella morganii S3 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
LHKJJB_09910 LHKJJB_09910 Morganella morganii S3 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
HKOGLL_00950 HKOGLL_00950 Morganella morganii S5 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
HKOGLL_09065 HKOGLL_09065 Morganella morganii S5 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
F4V73_RS01075 F4V73_RS01075 Morganella psychrotolerans - YbaK/prolyl-tRNA synthetase associated domain-containing protein
F4V73_RS04210 F4V73_RS04210 Morganella psychrotolerans - YbaK/EbsC family protein
PMI_RS03230 PMI_RS03230 Proteus mirabilis HI4320 - YbaK/prolyl-tRNA synthetase associated domain-containing protein

Distribution of group_47 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_47 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_47

Orthogroup content: 13 members

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This page summarizes the annotation of all members of the orthologous group group_47.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ebsC 10
2 - 3

Product

# Product Occurence
1 Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC 10
2 YbaK/prolyl-tRNA synthetase associated domain-containing protein 2
3 YbaK/EbsC family protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2606 13 J Translation, ribosomal structure and biogenesis (J) Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K19055 13 Ala-tRNA(Pro) deacylase [EC:3.1.1.-] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF04073 13 Aminoacyl-tRNA editing domain

Annotations of the 28 SwissProt hits

Annotation Number of occurrences
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 3
Multifunctional Ser/Thr-tRNA deacylase ProXp-y 2
Proline--tRNA ligase 16
Proline--tRNA ligase 1 6
Prolyl-tRNA editing protein ProX 1

Protein length

Min length 162
Max length 172
Mean length (sd) 165.8 (4.3)
Median length 163.0

Protein length distribution