Orthogroup:group_47


Homologs in group_47

Help

14 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06950 FBDBKF_06950 Morganella morganii S1 dacC D-alanyl-D-alanine carboxypeptidase
FBDBKF_10095 FBDBKF_10095 Morganella morganii S1 dacA D-alanyl-D-alanine carboxypeptidase DacA
EHELCC_04020 EHELCC_04020 Morganella morganii S2 dacC D-alanyl-D-alanine carboxypeptidase
EHELCC_04895 EHELCC_04895 Morganella morganii S2 dacA D-alanyl-D-alanine carboxypeptidase DacA
NLDBIP_04020 NLDBIP_04020 Morganella morganii S4 dacC D-alanyl-D-alanine carboxypeptidase
NLDBIP_04895 NLDBIP_04895 Morganella morganii S4 dacA D-alanyl-D-alanine carboxypeptidase DacA
LHKJJB_09850 LHKJJB_09850 Morganella morganii S3 dacC D-alanyl-D-alanine carboxypeptidase
LHKJJB_13735 LHKJJB_13735 Morganella morganii S3 dacA D-alanyl-D-alanine carboxypeptidase DacA
HKOGLL_09125 HKOGLL_09125 Morganella morganii S5 dacC D-alanyl-D-alanine carboxypeptidase
HKOGLL_12800 HKOGLL_12800 Morganella morganii S5 dacA D-alanyl-D-alanine carboxypeptidase DacA
F4V73_RS00240 F4V73_RS00240 Morganella psychrotolerans dacA D-alanyl-D-alanine carboxypeptidase DacA
F4V73_RS01135 F4V73_RS01135 Morganella psychrotolerans - serine hydrolase
PMI_RS02085 PMI_RS02085 Proteus mirabilis HI4320 dacA D-alanyl-D-alanine carboxypeptidase DacA
PMI_RS03290 PMI_RS03290 Proteus mirabilis HI4320 - serine hydrolase

Distribution of group_47 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_47 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_47

Orthogroup content: 14 members

Help

This page summarizes the annotation of all members of the orthologous group group_47.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 dacC 5
2 dacA 7
3 - 2

Product

# Product Occurence
1 D-alanyl-D-alanine carboxypeptidase 5
2 D-alanyl-D-alanine carboxypeptidase DacA 7
3 serine hydrolase 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1686 14 M Cell wall/membrane/envelope biogenesis (M) D-alanyl-D-alanine carboxypeptidase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07258 14 serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] Peptidoglycan biosynthesis
Metabolic pathways		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00768 14 D-alanyl-D-alanine carboxypeptidase
PF07943 14 Penicillin-binding protein 5, C-terminal domain

Annotations of the 18 SwissProt hits

Annotation Number of occurrences
D-alanyl-D-alanine carboxypeptidase 1
D-alanyl-D-alanine carboxypeptidase DacA 6
D-alanyl-D-alanine carboxypeptidase DacB 1
D-alanyl-D-alanine carboxypeptidase DacB1 1
D-alanyl-D-alanine carboxypeptidase DacB2 1
D-alanyl-D-alanine carboxypeptidase DacC 1
D-alanyl-D-alanine carboxypeptidase DacD 2
D-alanyl-D-alanine carboxypeptidase DacF 1
D-alanyl-D-alanine endopeptidase 4

Protein length

Min length 400
Max length 404
Mean length (sd) 401.9 (2.0)
Median length 401.5

Protein length distribution