Homologs in group_3583

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4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_16505 EHELCC_16505 100.0 Morganella morganii S2 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
NLDBIP_16715 NLDBIP_16715 100.0 Morganella morganii S4 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
LHKJJB_16755 LHKJJB_16755 100.0 Morganella morganii S3 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
HKOGLL_18860 HKOGLL_18860 100.0 Morganella morganii S5 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC

Distribution of the homologs in the orthogroup group_3583

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3583

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P71000 4.99e-43 142 50 3 154 4 ywhH Uncharacterized protein YwhH Bacillus subtilis (strain 168)
P36922 9.65e-11 60 29 1 123 3 EF_1730 Putative Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase EbsC Enterococcus faecalis (strain ATCC 700802 / V583)
C6E496 3e-06 49 28 2 114 3 proS Proline--tRNA ligase Geobacter sp. (strain M21)
B5EIT9 3e-06 49 28 2 114 3 proS Proline--tRNA ligase Citrifermentans bemidjiense (strain ATCC BAA-1014 / DSM 16622 / JCM 12645 / Bem)
P45202 3.09e-06 47 26 2 127 1 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A1APU5 4.35e-06 48 26 2 133 3 proS Proline--tRNA ligase Pelobacter propionicus (strain DSM 2379 / NBRC 103807 / OttBd1)
B1L8Y1 7.57e-06 48 31 3 96 3 proS Proline--tRNA ligase Thermotoga sp. (strain RQ2)
Q9WYY4 7.57e-06 48 31 3 96 3 proS Proline--tRNA ligase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
A5IJQ9 1.61e-05 47 30 3 96 3 proS Proline--tRNA ligase Thermotoga petrophila (strain ATCC BAA-488 / DSM 13995 / JCM 10881 / RKU-1)
B3E1X5 2.74e-05 46 27 2 105 3 proS Proline--tRNA ligase Trichlorobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ)
P0AAR4 3.52e-05 45 28 3 123 3 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK Shigella flexneri
P0AAR3 3.52e-05 45 28 3 123 1 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK Escherichia coli (strain K12)
C6BYX7 3.83e-05 45 28 3 108 3 proS Proline--tRNA ligase Maridesulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIMB 8403 / VKM B-1763)
B2V6W5 5.12e-05 45 30 2 104 3 proS Proline--tRNA ligase Sulfurihydrogenibium sp. (strain YO3AOP1)
A8FDC1 7.08e-05 45 27 4 132 3 proS Proline--tRNA ligase Bacillus pumilus (strain SAFR-032)
B8DNM5 0.000138 44 32 3 108 3 proS Proline--tRNA ligase Nitratidesulfovibrio vulgaris (strain DSM 19637 / Miyazaki F)
A3DJL6 0.000156 44 30 2 89 3 proS Proline--tRNA ligase Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)
C0ZF57 0.000266 43 28 4 101 3 proS Proline--tRNA ligase Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599)
C5D9C3 0.00052 42 28 2 91 3 proS Proline--tRNA ligase Geobacillus sp. (strain WCH70)
C0QY98 0.000563 42 23 2 114 3 proS Proline--tRNA ligase Brachyspira hyodysenteriae (strain ATCC 49526 / WA1)
C4XTD0 0.000693 42 35 3 91 3 proS Proline--tRNA ligase Solidesulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_19560
Feature type CDS
Gene ebsC
Product Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
Location 18988 - 19458 (strand: 1)
Length 471 (nucleotides) / 156 (amino acids)
In genomic island -

Contig

Accession contig_41
Length 20756 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3583
Orthogroup size 5
N. genomes 5

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Genomic region

Domains

PF04073 Aminoacyl-tRNA editing domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2606 Translation, ribosomal structure and biogenesis (J) J Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC

Protein Sequence

MSIETVRAWFGTHAPDVTIIETTQPTATVTQAAEVHGVGPGQICKTLSFKLTDDSAILIVMAGDARLDNKKFKTQFGCKAKMLNAEEVVHFTGHPVGGVCPFGLPVPLTVYADHSLREYDTVLPAAGSANSAVRLTPARLAELTNAQWLDVTTQPV

Flanking regions ( +/- flanking 50bp)

CTGTTGGTGCAAACACATAAAAAGCACACGATAATAAAACGGAGTCCTGAATGAGTATCGAAACGGTTCGTGCCTGGTTCGGCACGCATGCCCCGGATGTCACGATTATTGAGACCACACAGCCGACTGCCACTGTCACTCAGGCAGCAGAAGTTCATGGTGTCGGCCCCGGTCAGATCTGCAAAACACTCTCTTTTAAGCTGACGGATGACAGCGCGATTCTGATTGTGATGGCAGGGGACGCCCGGCTGGATAATAAAAAATTCAAAACACAGTTCGGCTGCAAGGCCAAAATGCTGAATGCAGAGGAAGTGGTGCATTTCACCGGCCATCCGGTCGGGGGAGTCTGTCCGTTCGGGCTGCCGGTACCGCTGACCGTTTATGCGGATCATTCACTCCGTGAGTATGACACGGTATTACCTGCGGCGGGGTCGGCTAATTCCGCTGTCCGGCTGACACCTGCGCGGCTGGCGGAACTGACAAACGCACAGTGGCTGGATGTCACCACTCAGCCGGTATAAACAGACAGCACCGCATCAGCGGTGCTGTCACACACTCAGTGTTCCGGTGG