Homologs in group_47

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12 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01865 FBDBKF_01865 51.2 Morganella morganii S1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
FBDBKF_06890 FBDBKF_06890 69.8 Morganella morganii S1 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
EHELCC_02335 EHELCC_02335 51.2 Morganella morganii S2 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
EHELCC_04080 EHELCC_04080 69.9 Morganella morganii S2 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
NLDBIP_01125 NLDBIP_01125 51.2 Morganella morganii S4 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
NLDBIP_04080 NLDBIP_04080 69.9 Morganella morganii S4 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
LHKJJB_00910 LHKJJB_00910 51.2 Morganella morganii S3 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
LHKJJB_09910 LHKJJB_09910 69.9 Morganella morganii S3 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
HKOGLL_00950 HKOGLL_00950 51.2 Morganella morganii S5 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
HKOGLL_09065 HKOGLL_09065 69.9 Morganella morganii S5 ebsC Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC
F4V73_RS01075 F4V73_RS01075 70.6 Morganella psychrotolerans - YbaK/prolyl-tRNA synthetase associated domain-containing protein
F4V73_RS04210 F4V73_RS04210 49.4 Morganella psychrotolerans - YbaK/EbsC family protein

Distribution of the homologs in the orthogroup group_47

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_47

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P64483 7.11e-76 226 70 0 154 1 proXp-y Multifunctional Ser/Thr-tRNA deacylase ProXp-y Escherichia coli (strain K12)
P64484 7.11e-76 226 70 0 154 3 proXp-y Multifunctional Ser/Thr-tRNA deacylase ProXp-y Escherichia coli O157:H7
Q9L4Q7 0.000331 42 29 2 97 1 proX Prolyl-tRNA editing protein ProX Acetoanaerobium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / CCUG 9281 / NCIMB 10654 / HF)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS03230
Feature type CDS
Gene -
Product YbaK/prolyl-tRNA synthetase associated domain-containing protein
Location 714932 - 715429 (strand: -1)
Length 498 (nucleotides) / 165 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_47
Orthogroup size 13
N. genomes 7

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Genomic region

Domains

PF04073 Aminoacyl-tRNA editing domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2606 Translation, ribosomal structure and biogenesis (J) J Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K19055 Ala-tRNA(Pro) deacylase [EC:3.1.1.-] - -

Protein Sequence

MSLTIFEQLTTLLNNHHARYRVMEHPTAGRSEEVAKIRGTQLGQGAKGLVCHVKGNGIKQHVLAILPADKQADLSKLAIAIGGTRASLASPKEVDELTQCVFGAIPPFSFHPALKLVADPLLFERFDELAFNAGTLERSIILNTQDYQRIAQPELIHFIRQDDND

Flanking regions ( +/- flanking 50bp)

AGTCGTATAATGACCGAATAAGAATACATGCTTAATCTTAGGAGTCATTGATGTCTTTGACTATTTTCGAGCAATTAACCACATTACTCAATAACCACCACGCCCGTTATCGCGTCATGGAACACCCGACCGCGGGTCGTTCTGAGGAAGTTGCTAAAATAAGAGGTACACAATTAGGGCAAGGGGCAAAAGGTCTAGTTTGTCATGTAAAAGGTAATGGTATTAAACAACACGTACTGGCCATTTTACCTGCTGATAAACAAGCTGATCTATCAAAACTCGCTATCGCTATTGGTGGGACAAGAGCCTCTCTTGCAAGCCCGAAAGAAGTTGATGAACTAACGCAATGTGTATTTGGCGCGATCCCACCTTTTAGTTTTCATCCAGCACTAAAACTGGTTGCTGATCCGCTATTATTTGAACGTTTTGATGAATTAGCCTTTAATGCTGGAACATTAGAACGCTCGATTATTTTAAATACACAAGATTATCAGCGGATTGCTCAGCCCGAGTTAATTCATTTTATTCGCCAAGATGATAATGATTAATAAAAGTACTATAAAATGCAGTTAAAAAGTATTTTTTAACTATAACTTTT