PF01300


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01300, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01300
Description Telomere recombination

Occurence in the database

PF01300 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_945 FBDBKF_05145 36551 37171 -1 tsaC L-threonylcarbamoyladenylate synthase Morganella morganii S1
1 group_987 FBDBKF_05455 99573 101867 -1 hypF carbamoyltransferase HypF Morganella morganii S1
2 group_2363 FBDBKF_19065 2015 2587 -1 tsaC L-threonylcarbamoyladenylate synthase type 1 TsaC Morganella morganii S1
3 group_987 EHELCC_12135 79627 81921 1 hypF carbamoyltransferase HypF Morganella morganii S2
4 group_945 EHELCC_12445 144323 144943 1 tsaC L-threonylcarbamoyladenylate synthase Morganella morganii S2
5 group_2363 EHELCC_18810 2015 2587 -1 tsaC L-threonylcarbamoyladenylate synthase type 1 TsaC Morganella morganii S2
6 group_987 NLDBIP_12475 79582 81876 1 hypF carbamoyltransferase HypF Morganella morganii S4
7 group_945 NLDBIP_12785 144278 144898 1 tsaC L-threonylcarbamoyladenylate synthase Morganella morganii S4
8 group_2363 NLDBIP_18825 2015 2587 -1 tsaC L-threonylcarbamoyladenylate synthase type 1 TsaC Morganella morganii S4
9 group_987 LHKJJB_12335 79627 81921 1 hypF carbamoyltransferase HypF Morganella morganii S3
10 group_945 LHKJJB_12645 144323 144943 1 tsaC L-threonylcarbamoyladenylate synthase Morganella morganii S3
11 group_2363 LHKJJB_18680 2015 2587 -1 tsaC L-threonylcarbamoyladenylate synthase type 1 TsaC Morganella morganii S3
12 group_987 HKOGLL_10950 79627 81921 1 hypF carbamoyltransferase HypF Morganella morganii S5
13 group_945 HKOGLL_11260 144323 144943 1 tsaC L-threonylcarbamoyladenylate synthase Morganella morganii S5
14 group_2363 HKOGLL_18415 2015 2587 -1 tsaC L-threonylcarbamoyladenylate synthase type 1 TsaC Morganella morganii S5
15 group_987 F4V73_RS03840 813148 815448 1 hypF carbamoyltransferase HypF Morganella psychrotolerans
16 group_945 F4V73_RS05600 1191658 1192278 -1 L-threonylcarbamoyladenylate synthase Morganella psychrotolerans
17 group_2363 F4V73_RS19100 28087 28659 1 tsaC L-threonylcarbamoyladenylate synthase type 1 TsaC Morganella psychrotolerans
18 group_945 PMI_RS06470 1419761 1420381 -1 L-threonylcarbamoyladenylate synthase Proteus mirabilis HI4320
19 group_987 PMI_RS07305 1598883 1601183 -1 hypF carbamoyltransferase HypF Proteus mirabilis HI4320
20 group_2363 PMI_RS16325 3603730 3604299 1 tsaC L-threonylcarbamoyladenylate synthase type 1 TsaC Proteus mirabilis HI4320