Homologs in group_987

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05455 FBDBKF_05455 59.9 Morganella morganii S1 hypF carbamoyltransferase HypF
EHELCC_12135 EHELCC_12135 59.9 Morganella morganii S2 hypF carbamoyltransferase HypF
NLDBIP_12475 NLDBIP_12475 59.9 Morganella morganii S4 hypF carbamoyltransferase HypF
LHKJJB_12335 LHKJJB_12335 59.9 Morganella morganii S3 hypF carbamoyltransferase HypF
HKOGLL_10950 HKOGLL_10950 59.9 Morganella morganii S5 hypF carbamoyltransferase HypF
F4V73_RS03840 F4V73_RS03840 57.9 Morganella psychrotolerans hypF carbamoyltransferase HypF

Distribution of the homologs in the orthogroup group_987

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_987

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P30131 0.0 738 52 9 762 1 hypF Carbamoyltransferase HypF Escherichia coli (strain K12)
Q02987 0.0 572 42 13 762 1 hypF Carbamoyltransferase HypF Rhodobacter capsulatus
Q55638 3.91e-171 514 40 16 785 3 hypF Carbamoyltransferase HypF Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
O07451 3.57e-160 487 38 16 796 3 hypF2 Carbamoyltransferase HypF2 Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
Q43950 7.48e-160 485 40 18 785 3 hypF Carbamoyltransferase HypF Azotobacter chroococcum mcd 1
P40596 3.22e-159 484 39 14 778 3 hypF Carbamoyltransferase HypF Azotobacter vinelandii
P28156 1.24e-146 451 37 20 781 3 hypF Carbamoyltransferase HypF Rhizobium leguminosarum bv. viciae
Q58123 4.1e-138 429 33 20 777 3 hypF Probable carbamoyltransferase HypF Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P45805 1.72e-43 165 34 8 381 5 hypF1 Carbamoyltransferase HypF homolog Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
Q6LLJ9 7.38e-10 62 30 3 156 3 tsaC Threonylcarbamoyl-AMP synthase Photobacterium profundum (strain SS9)
A7N129 9.21e-08 56 27 3 155 3 tsaC Threonylcarbamoyl-AMP synthase Vibrio campbellii (strain ATCC BAA-1116)
Q38VU9 1.51e-07 53 35 1 91 3 acyP Acylphosphatase Latilactobacillus sakei subsp. sakei (strain 23K)
Q15ZX7 4.54e-07 54 35 6 144 3 tsaC Threonylcarbamoyl-AMP synthase Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087)
B1JJI2 1.64e-06 52 30 4 153 3 tsaC Threonylcarbamoyl-AMP synthase Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q664V8 1.64e-06 52 30 4 153 3 tsaC Threonylcarbamoyl-AMP synthase Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TH27 1.64e-06 52 30 4 153 3 tsaC Threonylcarbamoyl-AMP synthase Yersinia pestis (strain Pestoides F)
Q1CCY0 1.64e-06 52 30 4 153 3 tsaC Threonylcarbamoyl-AMP synthase Yersinia pestis bv. Antiqua (strain Nepal516)
A9R933 1.64e-06 52 30 4 153 3 tsaC Threonylcarbamoyl-AMP synthase Yersinia pestis bv. Antiqua (strain Angola)
Q74XX5 1.64e-06 52 30 4 153 3 tsaC Threonylcarbamoyl-AMP synthase Yersinia pestis
B2K500 1.64e-06 52 30 4 153 3 tsaC Threonylcarbamoyl-AMP synthase Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C2Y3 1.64e-06 52 30 4 153 3 tsaC Threonylcarbamoyl-AMP synthase Yersinia pestis bv. Antiqua (strain Antiqua)
A7FNJ8 1.64e-06 52 30 4 153 3 tsaC Threonylcarbamoyl-AMP synthase Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Q87KE2 2.6e-06 52 27 3 151 3 tsaC Threonylcarbamoyl-AMP synthase Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
A8MC09 2.73e-06 49 34 3 92 3 acyP Acylphosphatase Caldivirga maquilingensis (strain ATCC 700844 / DSM 13496 / JCM 10307 / IC-167)
Q7MGL3 3.5e-06 51 30 5 176 3 tsaC Threonylcarbamoyl-AMP synthase Vibrio vulnificus (strain YJ016)
Q8DDD6 3.5e-06 51 30 5 176 3 tsaC Threonylcarbamoyl-AMP synthase Vibrio vulnificus (strain CMCP6)
Q1MFT8 6.92e-06 48 32 2 90 3 acyP Acylphosphatase Rhizobium johnstonii (strain DSM 114642 / LMG 32736 / 3841)
Q5QXJ5 1.18e-05 50 27 3 159 3 tsaC Threonylcarbamoyl-AMP synthase Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)
Q9KVT5 1.91e-05 49 26 3 153 3 tsaC Threonylcarbamoyl-AMP synthase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F4C5 1.91e-05 49 26 3 153 3 tsaC Threonylcarbamoyl-AMP synthase Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
B1KCX0 1.92e-05 49 27 5 161 3 tsaC Threonylcarbamoyl-AMP synthase Shewanella woodyi (strain ATCC 51908 / MS32)
A1JRY6 2.14e-05 49 29 4 154 3 tsaC Threonylcarbamoyl-AMP synthase Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q65UA8 2.99e-05 46 40 2 71 3 acyP Acylphosphatase Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
P39153 8.59e-05 49 25 4 161 1 ywlC Threonylcarbamoyl-AMP synthase Bacillus subtilis (strain 168)
A4WF91 0.000116 47 26 3 154 3 tsaC Threonylcarbamoyl-AMP synthase Enterobacter sp. (strain 638)
A5IM19 0.000118 45 38 6 91 3 acyP Acylphosphatase Thermotoga petrophila (strain ATCC BAA-488 / DSM 13995 / JCM 10881 / RKU-1)
Q9X1Q0 0.000118 45 38 6 91 3 acyP Acylphosphatase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
A8FP81 0.00012 47 26 5 162 3 tsaC Threonylcarbamoyl-AMP synthase Shewanella sediminis (strain HAW-EB3)
Q5E4P9 0.00017 44 37 3 82 3 acyP Acylphosphatase Aliivibrio fischeri (strain ATCC 700601 / ES114)
A1S1K5 0.0003 46 29 5 149 3 tsaC Threonylcarbamoyl-AMP synthase Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Q48AU1 0.000324 45 28 3 139 3 tsaC Threonylcarbamoyl-AMP synthase Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
A1S579 0.000366 43 32 3 91 3 acyP Acylphosphatase Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Q12TA0 0.000391 45 23 4 163 3 tsaC Threonylcarbamoyl-AMP synthase Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
Q21FZ9 0.000428 43 40 1 69 3 acyP Acylphosphatase Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)
A3QJE8 0.000503 45 27 4 148 3 tsaC Threonylcarbamoyl-AMP synthase Shewanella loihica (strain ATCC BAA-1088 / PV-4)
Q4L6A9 0.000515 43 35 3 88 3 acyP Acylphosphatase Staphylococcus haemolyticus (strain JCSC1435)
Q8XU24 0.000544 43 31 1 85 3 acyP2 Acylphosphatase 2 Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000)
Q5E1R5 0.001 44 24 5 179 3 tsaC Threonylcarbamoyl-AMP synthase Aliivibrio fischeri (strain ATCC 700601 / ES114)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS07305
Feature type CDS
Gene hypF
Product carbamoyltransferase HypF
Location 1598883 - 1601183 (strand: -1)
Length 2301 (nucleotides) / 766 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_987
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00708 Acylphosphatase
PF01300 Telomere recombination
PF07503 HypF finger
PF17788 HypF Kae1-like domain
PF22521 Carbamoyltransferase, Kae1-like Domain, second subdomain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0068 Posttranslational modification, protein turnover, chaperones (O) O Hydrogenase maturation factor HypF (carbamoyltransferase)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K04656 hydrogenase maturation protein HypF - -

Protein Sequence

MSNGITLRVKGKVQGVGFRPFVWQLAHHFGLLGQVSNDSLGVLIHLTLSPQNQHFINALTAQCPPLARIERIEQTPYQWEQLPTDFTIVKSGGGEMDTQVVPDAATCQACIDELFDPQNRRYHYPFINCTHCGPRFTIIKKMPYDRPFTSMSAFPFCPTCQHEYQDPADRRFHAQPNACPVCGPHIWLADHQGQQLAIKERALTQACQALLAGKIVAVKGIGGFHLVCDARNSESVARLRARKHRPAKPLAVMLTGTEQIQKPSDNAEFYSKVIETLTSTAAPIVLIPKEIAPISLSELIAPGLTEVGVMLPANPLQHLLAHETQIPLVMTSGNATGHTPALTNEEALIQLGDIAELFLMHNREIIQRADDSLVRIEDGQCVMIRRSRGYVPDAIALPTTFDAQPAILALGGDLKNVFCLLKEHQAIMGPHLGDLDDLSVRQQLLKSLTLFQQIYRFTPKAIAIDAHPNYISHQIGKQLAEQQHIPVIEVPHHHAHIVSCLAEHGHTQQQGAVIGIALDGLGYGQDGSLWGGECLLVDYKKSQRIGGLPAVAMPGGNLASIQPWRNWFAHLATFTKDWQGSVITQAIPLTELQILSKAVARGLNSPLASSCGRLFDAVACSLGLSPKQISWEGEAACYLQSAALQCHVDRYADIIKQYGHLMPVKDKHVDLSIFWSQWESITLNTSEKAWLFHYLLAESLGDIALQAAQEHQIDTIVLTGGVFNNILLKDLFKQKLNNKKVLTPMILPSGDGGIALGQALIASHFM

Flanking regions ( +/- flanking 50bp)

ATAATCACTAAACTAGAATAAGCTTAAACTTATTTTGATTTGGTGATCCTATGAGTAACGGCATTACATTGCGTGTGAAAGGAAAGGTTCAAGGTGTTGGCTTTCGCCCCTTTGTTTGGCAATTAGCACATCATTTTGGTTTATTAGGGCAGGTGAGTAATGATAGCTTAGGAGTATTGATCCACTTAACGTTATCACCGCAAAATCAACACTTTATTAATGCATTAACAGCTCAATGTCCTCCTCTTGCACGCATTGAACGTATTGAACAAACACCTTATCAATGGGAGCAACTCCCCACGGACTTTACTATTGTAAAAAGTGGTGGTGGAGAAATGGATACACAAGTTGTACCTGATGCAGCGACTTGTCAGGCTTGTATTGATGAGTTGTTTGATCCACAAAATCGTCGTTATCACTATCCTTTTATAAACTGCACCCATTGCGGTCCCCGTTTTACTATTATAAAAAAAATGCCTTACGACAGGCCTTTTACCTCTATGTCTGCATTTCCATTTTGTCCGACTTGCCAACATGAATATCAAGATCCCGCAGATAGGCGTTTTCATGCACAACCTAATGCCTGTCCTGTCTGTGGGCCTCATATTTGGTTGGCAGATCATCAAGGGCAACAACTTGCAATAAAAGAGCGGGCATTAACGCAAGCTTGTCAGGCGCTATTAGCGGGGAAAATTGTTGCTGTAAAAGGCATTGGTGGCTTTCATTTAGTCTGTGACGCACGCAATAGTGAAAGTGTTGCGCGTTTAAGAGCGCGTAAACATCGTCCAGCCAAACCACTTGCGGTGATGTTAACCGGGACTGAGCAGATCCAAAAACCGAGCGATAATGCCGAGTTTTACTCAAAAGTGATAGAAACATTAACCAGTACCGCAGCACCTATCGTACTTATTCCTAAAGAAATCGCCCCTATTTCATTAAGTGAACTGATTGCACCTGGATTAACAGAAGTAGGTGTTATGTTACCAGCTAATCCTTTGCAACATCTTCTCGCACATGAAACACAAATTCCATTAGTCATGACCTCTGGTAATGCGACGGGACACACTCCTGCATTAACCAATGAAGAGGCGTTAATTCAGCTTGGTGATATTGCAGAATTATTTCTAATGCATAATAGGGAGATTATACAAAGAGCGGACGATTCATTAGTGCGTATTGAAGATGGTCAGTGTGTGATGATCCGCCGTTCACGGGGTTATGTACCAGATGCTATCGCATTGCCAACCACTTTTGATGCACAACCTGCAATTTTGGCTTTAGGAGGGGATCTGAAAAATGTGTTTTGTCTCTTAAAAGAGCACCAAGCTATTATGGGGCCGCATTTAGGTGATTTAGATGATTTAAGTGTGAGGCAACAATTACTGAAATCACTCACGCTGTTTCAACAGATCTATCGTTTTACGCCCAAAGCGATTGCCATTGATGCTCATCCTAATTATATCAGCCATCAAATAGGTAAACAGCTAGCTGAACAGCAACATATTCCTGTTATAGAAGTTCCCCATCACCATGCACATATTGTCTCTTGCTTAGCAGAGCATGGACATACACAGCAACAAGGCGCAGTAATTGGTATAGCCCTTGATGGTCTAGGGTATGGACAAGATGGCTCTTTATGGGGAGGCGAGTGTTTGCTGGTGGATTATAAAAAATCTCAACGTATTGGCGGGCTACCTGCGGTTGCTATGCCGGGAGGAAATTTAGCTTCAATACAGCCTTGGCGAAATTGGTTCGCACATTTAGCTACTTTTACAAAAGATTGGCAAGGTAGTGTTATCACCCAAGCAATTCCGCTCACTGAGTTACAGATTTTGAGTAAGGCAGTGGCTCGTGGTTTAAATTCACCGCTAGCATCATCTTGTGGACGATTATTTGACGCAGTTGCTTGCTCTTTGGGATTATCACCTAAACAAATAAGCTGGGAAGGCGAAGCGGCATGCTACTTACAAAGTGCTGCGTTACAGTGTCACGTAGATCGGTATGCTGATATCATCAAGCAATATGGACATTTAATGCCTGTAAAAGATAAGCATGTTGATTTGTCCATTTTCTGGTCACAATGGGAAAGCATCACATTGAATACCAGTGAGAAGGCTTGGTTATTTCACTATTTATTAGCCGAAAGTTTGGGTGATATTGCTCTGCAAGCTGCGCAAGAACATCAGATTGATACTATTGTTTTAACAGGAGGGGTATTCAATAATATCTTACTTAAGGATCTGTTTAAGCAAAAATTAAACAATAAAAAGGTATTAACCCCTATGATATTGCCATCTGGTGATGGTGGAATTGCATTAGGACAAGCACTTATTGCCAGTCATTTTATGTAAAAAATAAAATGATTGTAATCTATTAGCTAACTTTTAGTGCACCATAACAA