Homologs in group_1054

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05455 FBDBKF_05455 100.0 Morganella morganii S1 hypF carbamoyltransferase HypF
EHELCC_12135 EHELCC_12135 100.0 Morganella morganii S2 hypF carbamoyltransferase HypF
LHKJJB_12335 LHKJJB_12335 100.0 Morganella morganii S3 hypF carbamoyltransferase HypF
HKOGLL_10950 HKOGLL_10950 100.0 Morganella morganii S5 hypF carbamoyltransferase HypF
F4V73_RS03840 F4V73_RS03840 76.8 Morganella psychrotolerans hypF carbamoyltransferase HypF
PMI_RS07305 PMI_RS07305 59.9 Proteus mirabilis HI4320 hypF carbamoyltransferase HypF

Distribution of the homologs in the orthogroup group_1054

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1054

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P30131 0.0 687 51 11 765 1 hypF Carbamoyltransferase HypF Escherichia coli (strain K12)
Q02987 0.0 560 43 15 762 1 hypF Carbamoyltransferase HypF Rhodobacter capsulatus
Q55638 3.78e-163 493 39 15 786 3 hypF Carbamoyltransferase HypF Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
O07451 3.8e-163 494 39 18 805 3 hypF2 Carbamoyltransferase HypF2 Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
Q43950 5.32e-155 473 41 19 780 3 hypF Carbamoyltransferase HypF Azotobacter chroococcum mcd 1
P28156 1.01e-148 456 39 22 779 3 hypF Carbamoyltransferase HypF Rhizobium leguminosarum bv. viciae
P40596 1.45e-143 443 39 16 776 3 hypF Carbamoyltransferase HypF Azotobacter vinelandii
Q58123 6.23e-133 415 34 19 776 3 hypF Probable carbamoyltransferase HypF Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P45805 1.06e-44 169 36 9 373 5 hypF1 Carbamoyltransferase HypF homolog Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P39153 3.81e-07 56 30 6 155 1 ywlC Threonylcarbamoyl-AMP synthase Bacillus subtilis (strain 168)
Q38VU9 1.36e-06 50 36 1 76 3 acyP Acylphosphatase Latilactobacillus sakei subsp. sakei (strain 23K)
Q74ID8 8.17e-06 48 36 2 71 3 acyP Acylphosphatase Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533)
Q1MFT8 1.21e-05 47 34 2 88 3 acyP Acylphosphatase Rhizobium johnstonii (strain DSM 114642 / LMG 32736 / 3841)
A8MC09 3.21e-05 46 38 2 81 3 acyP Acylphosphatase Caldivirga maquilingensis (strain ATCC 700844 / DSM 13496 / JCM 10307 / IC-167)
A6UH73 3.42e-05 46 36 2 86 3 acyP Acylphosphatase Sinorhizobium medicae (strain WSM419)
Q2K7M8 4.07e-05 46 34 2 89 3 acyP Acylphosphatase Rhizobium etli (strain ATCC 51251 / DSM 11541 / JCM 21823 / NBRC 15573 / CFN 42)
Q038C3 6.47e-05 45 35 3 80 3 acyP Acylphosphatase Lacticaseibacillus paracasei (strain ATCC 334 / BCRC 17002 / CCUG 31169 / CIP 107868 / KCTC 3260 / NRRL B-441)
Q831U6 7.5e-05 45 35 2 73 3 acyP Acylphosphatase Enterococcus faecalis (strain ATCC 700802 / V583)
A6VN24 0.0001 45 35 2 85 3 acyP Acylphosphatase Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z)
Q1WUK1 0.000155 44 38 2 70 3 acyP Acylphosphatase Ligilactobacillus salivarius (strain UCC118)
Q92TK9 0.000179 44 34 2 86 3 acyP Acylphosphatase Rhizobium meliloti (strain 1021)
Q65UA8 0.000189 44 34 3 83 3 acyP Acylphosphatase Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
Q041W5 0.000315 43 32 1 70 3 acyP Acylphosphatase Lactobacillus gasseri (strain ATCC 33323 / DSM 20243 / BCRC 14619 / CIP 102991 / JCM 1131 / KCTC 3163 / NCIMB 11718 / NCTC 13722 / AM63)
Q8Y7A7 0.000493 43 35 3 79 3 acyP Acylphosphatase Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q71ZT9 0.000493 43 35 3 79 3 acyP Acylphosphatase Listeria monocytogenes serotype 4b (strain F2365)
Q92BX4 0.000493 43 35 3 79 3 acyP Acylphosphatase Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
A0AII3 0.00063 42 35 3 79 3 acyP Acylphosphatase Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / CCUG 15529 / CIP 8149 / NCTC 11857 / SLCC 5334 / V8)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_12475
Feature type CDS
Gene hypF
Product carbamoyltransferase HypF
Location 79582 - 81876 (strand: 1)
Length 2295 (nucleotides) / 764 (amino acids)
In genomic island -

Contig

Accession ZDB_527
Length 181446 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1054
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00708 Acylphosphatase
PF01300 Telomere recombination
PF07503 HypF finger
PF17788 HypF Kae1-like domain
PF22521 Carbamoyltransferase, Kae1-like Domain, second subdomain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0068 Posttranslational modification, protein turnover, chaperones (O) O Hydrogenase maturation factor HypF (carbamoyltransferase)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K04656 hydrogenase maturation protein HypF - -

Protein Sequence

MQAGVEIRVKGKVQGVGFRPAVWQIAHQMGLCGDVSNDSEGVLIHLPAEADIAGFISRLQAQCPPLARIDHIGQQHYTFEQCPAAFTITASGQGEMDTEIIPDAATCDVCLSELFDPGNRRYRYPFINCTHCGPRFTIIRGMPYDRPNTAMSVFPFCPVCQHEYRDPADRRFHAQPNACPDCGPHIWLTDPQQQITARFDDALSAAVRLLKDGKILAMQGLGGFHLVADSQNSDAVAVLRARKHRPAKPFAVMIPSVDWLTECTGREPDPGLITLLKSPAAPIVLTDEPEVIAALSPLVAPGLCETGIMLPSNPLQHLLLHDIQRPLIMTSGNASGHTPALDHAAAFEQLSSIADGFLLHNREIIQRADDSLVRYQAGDIQVLRRARGYVPDAIDVSVVTGKNPPAVLALGGDLKNTFCLLHHQQLITGPHLGDLADLSVQGQLEASLKLFERIYQFKPQVIAGDAHPGYISHQMGMALAQAHQVPFMPVYHHHAHIAACLAEHGWRQEDGEVVGIALDGLGYGADNTLWGGEILAGDYRHMTRTGGLPAVSLPGGDKAAVQPWRNLLAHLHHAGLWPSSPLASRLAGKNVSLLIKAIEQGINAPKASSCGRLFDAVACALGLTADQISWEGEAACALENCALQCHNQNELITGETLPLTADNTINLRPLWQMLADDTQTIPERAFRFHVLLANTVAGLADDTATRKNTDTIVLSGGVFNNRLLRRIIKDRLSHRQVREPRQLPCGDGGIAAGQALIAAMTLLN

Flanking regions ( +/- flanking 50bp)

CACTCTGTGCGCAGTAAACTGTTCCGGTTGAAATCAGGCAGGAGTGCGTTATGCAGGCGGGTGTGGAAATCCGGGTGAAGGGAAAAGTTCAGGGAGTTGGGTTTCGTCCGGCTGTCTGGCAGATAGCCCATCAGATGGGATTGTGCGGTGATGTCAGCAATGACAGTGAAGGGGTGCTTATCCACCTTCCGGCAGAAGCGGATATCGCCGGTTTTATCAGCCGGTTACAGGCACAATGCCCGCCGCTGGCGCGAATTGACCATATCGGGCAGCAGCATTATACCTTTGAACAGTGTCCGGCGGCATTTACCATCACCGCCAGCGGACAGGGGGAAATGGATACCGAAATTATCCCGGACGCAGCAACCTGTGATGTTTGTCTGAGTGAATTGTTTGACCCCGGCAACCGCCGTTACCGTTATCCCTTTATTAACTGCACGCACTGCGGGCCCCGTTTTACCATTATCAGGGGAATGCCGTATGATCGCCCGAATACAGCGATGTCGGTTTTTCCGTTTTGTCCGGTGTGTCAGCATGAATACCGTGACCCGGCAGATCGCCGCTTCCATGCGCAGCCGAATGCCTGTCCGGATTGCGGGCCGCATATCTGGCTGACGGATCCGCAGCAGCAGATTACCGCCCGCTTTGATGATGCTCTGTCAGCCGCAGTCCGTTTGCTGAAAGACGGCAAAATTCTGGCGATGCAGGGGCTGGGCGGCTTTCACCTGGTGGCGGATTCACAAAACAGTGACGCTGTGGCCGTACTGAGAGCCCGCAAACACCGGCCTGCCAAGCCATTTGCGGTGATGATACCGTCCGTTGACTGGCTGACGGAATGCACGGGTCGGGAGCCGGATCCCGGCCTGATAACTCTGCTGAAAAGCCCGGCAGCCCCCATTGTGCTGACAGATGAACCGGAAGTGATCGCTGCATTGTCTCCGCTGGTCGCGCCGGGATTGTGTGAAACCGGCATTATGCTGCCGTCTAATCCGCTACAGCACCTGTTGCTGCATGATATTCAGCGTCCGCTGATTATGACCTCCGGGAATGCATCAGGCCATACTCCGGCGCTGGATCACGCAGCGGCATTTGAGCAGCTCAGTTCCATTGCAGATGGTTTCCTGCTGCATAACCGTGAAATCATTCAGCGGGCGGATGATTCACTTGTCCGTTATCAGGCCGGAGATATTCAGGTGCTGCGGCGTGCCCGTGGTTATGTGCCGGATGCTATCGATGTCAGCGTAGTGACCGGCAAAAATCCGCCGGCAGTTCTGGCGCTGGGCGGTGACCTGAAAAACACCTTCTGCCTGCTGCATCATCAGCAGCTGATTACCGGGCCGCATCTCGGGGATTTGGCTGATCTCTCCGTACAGGGGCAACTGGAGGCTTCGCTGAAACTGTTTGAGCGGATTTATCAGTTCAAACCACAGGTTATCGCCGGGGATGCGCATCCCGGCTATATCAGTCATCAGATGGGGATGGCACTGGCACAGGCGCATCAGGTGCCGTTCATGCCGGTTTATCATCATCACGCGCATATTGCAGCCTGTCTGGCAGAACACGGCTGGCGTCAGGAAGATGGCGAAGTGGTGGGAATTGCACTGGACGGCCTCGGATACGGGGCAGATAACACATTATGGGGCGGTGAAATCCTGGCGGGTGATTACCGTCATATGACCCGTACCGGCGGGTTACCGGCCGTGAGTCTGCCTGGCGGGGACAAAGCGGCGGTACAGCCATGGCGTAACCTGCTGGCTCATCTGCATCACGCCGGTTTGTGGCCGTCTTCACCACTGGCATCACGGCTTGCCGGGAAGAATGTATCATTACTGATTAAAGCCATTGAGCAGGGTATCAATGCCCCGAAAGCATCATCCTGCGGGCGTTTGTTTGATGCAGTGGCCTGTGCGCTCGGATTAACCGCAGATCAGATAAGCTGGGAAGGGGAAGCCGCCTGTGCGCTGGAAAATTGCGCGTTACAGTGTCACAACCAGAATGAGCTTATTACCGGTGAAACACTGCCGCTGACTGCGGATAACACTATTAATTTACGTCCGCTCTGGCAGATGCTGGCGGATGATACTCAGACAATACCGGAAAGAGCATTCCGTTTTCATGTACTGCTGGCAAATACGGTTGCCGGGCTGGCGGATGATACAGCAACCCGGAAAAATACGGATACCATCGTGCTCTCCGGCGGCGTGTTTAATAACCGGTTGCTGCGCCGTATTATTAAGGACAGATTAAGCCACAGACAGGTGCGGGAACCCCGTCAGTTGCCATGTGGAGATGGCGGAATAGCGGCAGGTCAGGCACTTATCGCGGCAATGACATTACTTAACTGAAACCGGTGGCACGATTTAGCACAGTAAATATTTGTAATTTTTATCATCGC