PF00989


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00989, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00989
Description PAS fold

Occurence in the database

PF00989 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 5 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2846 FBDBKF_10585 77354 79129 1 atoS two-component system sensor histidine kinase AtoS Morganella morganii S1
1 group_2850 FBDBKF_10630 89303 90949 1 rocR RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S1
2 group_2266 FBDBKF_17430 17305 18600 -1 phoR phosphate regulon sensor histidine kinase PhoR Morganella morganii S1
3 group_2846 EHELCC_14920 77344 79119 1 atoS two-component system sensor histidine kinase AtoS Morganella morganii S2
4 group_2850 EHELCC_14965 89293 90939 1 rocR RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S2
5 group_2266 EHELCC_17325 17305 18600 -1 phoR phosphate regulon sensor histidine kinase PhoR Morganella morganii S2
6 group_2846 NLDBIP_14750 77344 79119 1 atoS two-component system sensor histidine kinase AtoS Morganella morganii S4
7 group_2850 NLDBIP_14795 89293 90939 1 rocR RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S4
8 group_2266 NLDBIP_17870 24196 25491 1 phoR phosphate regulon sensor histidine kinase PhoR Morganella morganii S4
9 group_2850 LHKJJB_14550 50787 52433 -1 rocR RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S3
10 group_2846 LHKJJB_14595 62607 64382 -1 atoS two-component system sensor histidine kinase AtoS Morganella morganii S3
11 group_2266 LHKJJB_17790 24194 25489 1 phoR phosphate regulon sensor histidine kinase PhoR Morganella morganii S3
12 group_2850 HKOGLL_13170 50787 52433 -1 rocR RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S5
13 group_2846 HKOGLL_13215 62607 64382 -1 atoS two-component system sensor histidine kinase AtoS Morganella morganii S5
14 group_2266 HKOGLL_17800 24194 25489 1 phoR phosphate regulon sensor histidine kinase PhoR Morganella morganii S5
15 group_2846 F4V73_RS14295 79860 81680 1 atoS two-component system sensor histidine kinase AtoS Morganella psychrotolerans
16 group_2850 F4V73_RS14340 91790 93427 1 sigma 54-interacting transcriptional regulator Morganella psychrotolerans
17 group_2266 F4V73_RS16605 141038 142333 -1 phoR phosphate regulon sensor histidine kinase PhoR Morganella psychrotolerans
18 group_2266 PMI_RS00255 79657 80949 1 phoR phosphate regulon sensor histidine kinase PhoR Proteus mirabilis HI4320
19 group_998 PMI_RS06610 1447787 1449352 -1 tyrR transcriptional regulator TyrR Proteus mirabilis HI4320
20 group_713 PMI_RS18300 4018571 4020907 1 arcB aerobic respiration two-component sensor histidine kinase ArcB Proteus mirabilis HI4320