Orthogroup:group_66


Homologs in group_66

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13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_04190 FBDBKF_04190 Morganella morganii S1 lysR DNA-binding transcriptional regulator, LysR family
FBDBKF_18125 FBDBKF_18125 Morganella morganii S1 lysR DNA-binding transcriptional regulator, LysR family
EHELCC_05480 EHELCC_05480 Morganella morganii S2 lysR DNA-binding transcriptional regulator, LysR family
EHELCC_16825 EHELCC_16825 Morganella morganii S2 lysR DNA-binding transcriptional regulator, LysR family
NLDBIP_05800 NLDBIP_05800 Morganella morganii S4 lysR DNA-binding transcriptional regulator, LysR family
NLDBIP_17625 NLDBIP_17625 Morganella morganii S4 lysR DNA-binding transcriptional regulator, LysR family
LHKJJB_02680 LHKJJB_02680 Morganella morganii S3 lysR DNA-binding transcriptional regulator, LysR family
LHKJJB_17545 LHKJJB_17545 Morganella morganii S3 lysR DNA-binding transcriptional regulator, LysR family
HKOGLL_06155 HKOGLL_06155 Morganella morganii S5 lysR DNA-binding transcriptional regulator, LysR family
HKOGLL_17360 HKOGLL_17360 Morganella morganii S5 lysR DNA-binding transcriptional regulator, LysR family
F4V73_RS08635 F4V73_RS08635 Morganella psychrotolerans - LysR family transcriptional regulator ArgP
F4V73_RS10330 F4V73_RS10330 Morganella psychrotolerans - LysR family transcriptional regulator ArgP
PMI_RS10025 PMI_RS10025 Proteus mirabilis HI4320 - LysR family transcriptional regulator ArgP

Distribution of group_66 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_66 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_66

Orthogroup content: 13 members

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This page summarizes the annotation of all members of the orthologous group group_66.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 lysR 10
2 - 3

Product

# Product Occurence
1 DNA-binding transcriptional regulator, LysR family 10
2 LysR family transcriptional regulator ArgP 3

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0583 13 K Transcription (K) DNA-binding transcriptional regulator, LysR family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K05596 13 LysR family transcriptional regulator, chromosome initiation inhibitor - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00126 13 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 13 LysR substrate binding domain

Annotations of the 152 SwissProt hits

Annotation Number of occurrences
Glycine cleavage system transcriptional activator 3
Glycine cleavage system transcriptional activator homolog 1
HTH-type transcriptional activator AmpR 3
HTH-type transcriptional regulator AbaB 1
HTH-type transcriptional regulator ArgP 77
HTH-type transcriptional regulator BudR (Fragment) 1
HTH-type transcriptional regulator CfxR 1
HTH-type transcriptional regulator CysL 1
HTH-type transcriptional regulator DsdC 1
HTH-type transcriptional regulator HdfR 48
HTH-type transcriptional regulator LysG 3
HTH-type transcriptional regulator MetR 2
HTH-type transcriptional regulator PgrR 1
HTH-type transcriptional regulator YjiE 1
HTH-type transcriptional regulator YtlI 1
Lysine export transcriptional regulatory protein LysG 2
Probable RuBisCO transcriptional regulator 2
Probable cat1 operon transcriptional activator 1
Uncharacterized HTH-type transcriptional regulator YafC 1
Uncharacterized HTH-type transcriptional regulator YfiE 1

Protein length

Min length 299
Max length 302
Mean length (sd) 300.8 (1.1)
Median length 300.0

Protein length distribution