PF00665


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00665, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 36 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00665
Description Integrase core domain

Occurence in the database

PF00665 is associated with 36 different proteins (see tab "Protein list" and "Profile")
The 36 proteins are classified into 6 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3432 FBDBKF_14445 87763 88617 -1 Integrase catalytic domain-containing protein Morganella morganii S1
1 group_127 FBDBKF_14510 98328 98954 1 IS3 family transposase Morganella morganii S1
2 group_127 FBDBKF_17935 24840 25187 1 Integrase core domain Morganella morganii S1
3 group_3511 FBDBKF_17970 33435 33791 1 Integrase core domain Morganella morganii S1
4 group_3668 FBDBKF_20155 3157 4167 -1 tnp IS30-like element ISAba125 family transposase Morganella morganii S1
5 group_3618 FBDBKF_20280 2613 4157 1 tnp IS3 family IS1353 transposase Morganella morganii S1
6 group_2445 FBDBKF_20310 8991 9530 1 IS3 family transposase Morganella morganii S1
7 group_2445 FBDBKF_20515 21 869 -1 insE IS3 family transposase Morganella morganii S1
8 group_3511 EHELCC_06365 2585 2941 -1 Integrase core domain Morganella morganii S2
9 group_127 EHELCC_06400 11189 11536 -1 Integrase core domain Morganella morganii S2
10 group_127 EHELCC_07770 18031 18657 -1 IS3 family transposase Morganella morganii S2
11 group_3432 EHELCC_07835 28368 29222 1 Integrase catalytic domain-containing protein Morganella morganii S2
12 group_2445 EHELCC_19060 7630 8169 -1 IS3 family transposase Morganella morganii S2
13 group_3618 EHELCC_19090 13003 14547 -1 tnp IS3 family IS1353 transposase Morganella morganii S2
14 group_2445 EHELCC_19845 1721 2569 1 insE IS3 family transposase Morganella morganii S2
15 group_3511 NLDBIP_06685 2458 2814 -1 Integrase core domain Morganella morganii S4
16 group_127 NLDBIP_06720 11062 11409 -1 Integrase core domain Morganella morganii S4
17 group_127 NLDBIP_08095 18031 18657 -1 IS3 family transposase Morganella morganii S4
18 group_3432 NLDBIP_08160 28368 29222 1 Integrase catalytic domain-containing protein Morganella morganii S4
19 group_2445 NLDBIP_19535 913 1452 -1 IS3 family transposase Morganella morganii S4
20 group_3618 NLDBIP_19565 6286 7830 -1 tnp IS3 family IS1353 transposase Morganella morganii S4
21 group_3668 NLDBIP_19590 3448 4458 1 tnp IS30-like element ISAba125 family transposase Morganella morganii S4
22 group_3432 LHKJJB_06105 227937 228791 -1 Integrase catalytic domain-containing protein Morganella morganii S3
23 group_127 LHKJJB_06170 238502 239128 1 IS3 family transposase Morganella morganii S3
24 group_3511 LHKJJB_19285 2369 2725 -1 Integrase core domain Morganella morganii S3
25 group_127 LHKJJB_19320 10973 11320 -1 Integrase core domain Morganella morganii S3
26 group_3618 LHKJJB_19500 2613 4157 1 tnp IS3 family IS1353 transposase Morganella morganii S3
27 group_2445 LHKJJB_19530 8991 9530 1 IS3 family transposase Morganella morganii S3
28 group_3668 LHKJJB_19555 3448 4458 1 tnp IS30-like element ISAba125 family transposase Morganella morganii S3
29 group_127 HKOGLL_04670 258232 258579 1 Integrase core domain Morganella morganii S5
30 group_3511 HKOGLL_04705 266827 267183 1 Integrase core domain Morganella morganii S5
31 group_127 HKOGLL_04745 2622 3248 -1 IS3 family transposase Morganella morganii S5
32 group_3432 HKOGLL_04810 12959 13813 1 Integrase catalytic domain-containing protein Morganella morganii S5
33 group_2445 HKOGLL_19415 913 1452 -1 IS3 family transposase Morganella morganii S5
34 group_3618 HKOGLL_19445 6286 7830 -1 tnp IS3 family IS1353 transposase Morganella morganii S5
35 group_3668 HKOGLL_19470 3448 4458 1 tnp IS30-like element ISAba125 family transposase Morganella morganii S5