PF00665

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF00665
Protein list: lists the 36 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF00665
Description Integrase core domain

Occurence in the database

PF00665 is associated with 36 different proteins
The 36 proteins are classified into 7 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3429 FBDBKF_14445 87763 88617 -1 Integrase catalytic domain-containing protein Morganella morganii S1
1 group_125 FBDBKF_14510 98328 98954 1 IS3 family transposase Morganella morganii S1
2 group_125 FBDBKF_17935 24840 25187 1 Integrase core domain Morganella morganii S1
3 group_64 FBDBKF_17970 33435 33791 1 Integrase core domain Morganella morganii S1
4 group_3666 FBDBKF_20155 3157 4167 -1 tnp IS30-like element ISAba125 family transposase Morganella morganii S1
5 group_3616 FBDBKF_20280 2613 4157 1 tnp IS3 family IS1353 transposase Morganella morganii S1
6 group_3621 FBDBKF_20310 8991 9530 1 IS3 family transposase Morganella morganii S1
7 group_3808 FBDBKF_20515 21 869 -1 insE IS3 family transposase Morganella morganii S1
8 group_64 EHELCC_06365 2585 2941 -1 Integrase core domain Morganella morganii S2
9 group_125 EHELCC_06400 11189 11536 -1 Integrase core domain Morganella morganii S2
10 group_125 EHELCC_07770 18031 18657 -1 IS3 family transposase Morganella morganii S2
11 group_3429 EHELCC_07835 28368 29222 1 Integrase catalytic domain-containing protein Morganella morganii S2
12 group_3621 EHELCC_19060 7630 8169 -1 IS3 family transposase Morganella morganii S2
13 group_3616 EHELCC_19090 13003 14547 -1 tnp IS3 family IS1353 transposase Morganella morganii S2
14 group_3808 EHELCC_19845 1721 2569 1 insE IS3 family transposase Morganella morganii S2
15 group_64 NLDBIP_06685 2458 2814 -1 Integrase core domain Morganella morganii S4
16 group_125 NLDBIP_06720 11062 11409 -1 Integrase core domain Morganella morganii S4
17 group_125 NLDBIP_08095 18031 18657 -1 IS3 family transposase Morganella morganii S4
18 group_3429 NLDBIP_08160 28368 29222 1 Integrase catalytic domain-containing protein Morganella morganii S4
19 group_3621 NLDBIP_19535 913 1452 -1 IS3 family transposase Morganella morganii S4
20 group_3616 NLDBIP_19565 6286 7830 -1 tnp IS3 family IS1353 transposase Morganella morganii S4
21 group_3666 NLDBIP_19590 3448 4458 1 tnp IS30-like element ISAba125 family transposase Morganella morganii S4
22 group_3429 LHKJJB_06105 227937 228791 -1 Integrase catalytic domain-containing protein Morganella morganii S3
23 group_125 LHKJJB_06170 238502 239128 1 IS3 family transposase Morganella morganii S3
24 group_64 LHKJJB_19285 2369 2725 -1 Integrase core domain Morganella morganii S3
25 group_125 LHKJJB_19320 10973 11320 -1 Integrase core domain Morganella morganii S3
26 group_3616 LHKJJB_19500 2613 4157 1 tnp IS3 family IS1353 transposase Morganella morganii S3
27 group_3621 LHKJJB_19530 8991 9530 1 IS3 family transposase Morganella morganii S3
28 group_3666 LHKJJB_19555 3448 4458 1 tnp IS30-like element ISAba125 family transposase Morganella morganii S3
29 group_125 HKOGLL_04670 258232 258579 1 Integrase core domain Morganella morganii S5
30 group_64 HKOGLL_04705 266827 267183 1 Integrase core domain Morganella morganii S5
31 group_125 HKOGLL_04745 2622 3248 -1 IS3 family transposase Morganella morganii S5
32 group_3429 HKOGLL_04810 12959 13813 1 Integrase catalytic domain-containing protein Morganella morganii S5
33 group_3621 HKOGLL_19415 913 1452 -1 IS3 family transposase Morganella morganii S5
34 group_3616 HKOGLL_19445 6286 7830 -1 tnp IS3 family IS1353 transposase Morganella morganii S5
35 group_3666 HKOGLL_19470 3448 4458 1 tnp IS30-like element ISAba125 family transposase Morganella morganii S5