Orthogroup:group_125


Homologs in group_125

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11 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_12390 FBDBKF_12390 Morganella morganii S1 - Primosomal protein I
FBDBKF_12880 FBDBKF_12880 Morganella morganii S1 - Phage terminase, large subunit
FBDBKF_18710 FBDBKF_18710 Morganella morganii S1 - Primosomal protein I
EHELCC_15285 EHELCC_15285 Morganella morganii S2 - Primosomal protein I
EHELCC_19155 EHELCC_19155 Morganella morganii S2 - Primosomal protein I
NLDBIP_15815 NLDBIP_15815 Morganella morganii S4 - Primosomal protein I
NLDBIP_19125 NLDBIP_19125 Morganella morganii S4 - Primosomal protein I
LHKJJB_16025 LHKJJB_16025 Morganella morganii S3 - Primosomal protein I
LHKJJB_19015 LHKJJB_19015 Morganella morganii S3 - Primosomal protein I
HKOGLL_15145 HKOGLL_15145 Morganella morganii S5 - Primosomal protein I
PMI_RS02395 PMI_RS02395 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein

Distribution of group_125 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_125 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_125

Orthogroup content: 11 members

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This page summarizes the annotation of all members of the orthologous group group_125.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 11

Product

# Product Occurence
1 Primosomal protein I 9
2 Phage terminase, large subunit 1
3 helix-turn-helix domain-containing protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1974 1 KT Transcription (K)
Signal transduction mechanisms (T)		 SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)
COG4189 9 K Transcription (K) Predicted transcriptional regulator, ArsR family

Pfam domain Annotation(s)

Domain ID Occurences Description
PF13730 11 Helix-turn-helix domain

Annotations of the 3 SwissProt hits

Annotation Number of occurrences
DNA replication protein gp18 1
Protein YmfN 1
Uncharacterized protein YdaU 1

Protein length

Min length 255
Max length 294
Mean length (sd) 287.4 (14.8)
Median length 294.0

Protein length distribution