PF00578
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00578, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 21 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF00578 |
Description |
AhpC/TSA family |
Occurence in the database
PF00578 is associated with 21 different proteins (see tab "Protein list" and "Profile") |
The 21 proteins are classified into 3 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_1468 |
FBDBKF_09420 |
113882 |
114445 |
1 |
ahpC |
alkyl hydroperoxide reductase subunit C |
Morganella morganii S1 |
1 |
group_1836 |
FBDBKF_13610 |
99732 |
100202 |
1 |
bcp |
thioredoxin-dependent thiol peroxidase |
Morganella morganii S1 |
2 |
group_2264 |
FBDBKF_17420 |
14864 |
15466 |
1 |
ahpC |
Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin) |
Morganella morganii S1 |
3 |
group_1836 |
EHELCC_08485 |
174989 |
175459 |
-1 |
bcp |
thioredoxin-dependent thiol peroxidase |
Morganella morganii S2 |
4 |
group_1468 |
EHELCC_09990 |
31659 |
32222 |
-1 |
ahpC |
alkyl hydroperoxide reductase subunit C |
Morganella morganii S2 |
5 |
group_2264 |
EHELCC_17315 |
14864 |
15466 |
1 |
ahpC |
Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin) |
Morganella morganii S2 |
6 |
group_1836 |
NLDBIP_08810 |
174989 |
175459 |
-1 |
bcp |
thioredoxin-dependent thiol peroxidase |
Morganella morganii S4 |
7 |
group_1468 |
NLDBIP_10335 |
9930 |
10493 |
-1 |
ahpC |
alkyl hydroperoxide reductase subunit C |
Morganella morganii S4 |
8 |
group_2264 |
NLDBIP_17880 |
27330 |
27932 |
-1 |
ahpC |
Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin) |
Morganella morganii S4 |
9 |
group_1836 |
LHKJJB_05455 |
81700 |
82170 |
1 |
bcp |
thioredoxin-dependent thiol peroxidase |
Morganella morganii S3 |
10 |
group_1468 |
LHKJJB_11020 |
181035 |
181598 |
1 |
ahpC |
alkyl hydroperoxide reductase subunit C |
Morganella morganii S3 |
11 |
group_2264 |
LHKJJB_17800 |
27328 |
27930 |
-1 |
ahpC |
Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin) |
Morganella morganii S3 |
12 |
group_1836 |
HKOGLL_05460 |
159580 |
160050 |
-1 |
bcp |
thioredoxin-dependent thiol peroxidase |
Morganella morganii S5 |
13 |
group_1468 |
HKOGLL_14080 |
114336 |
114899 |
1 |
ahpC |
alkyl hydroperoxide reductase subunit C |
Morganella morganii S5 |
14 |
group_2264 |
HKOGLL_17810 |
27328 |
27930 |
-1 |
ahpC |
Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin) |
Morganella morganii S5 |
15 |
group_1836 |
F4V73_RS03155 |
673850 |
674320 |
-1 |
bcp |
thioredoxin-dependent thiol peroxidase |
Morganella psychrotolerans |
16 |
group_1468 |
F4V73_RS10545 |
240558 |
241121 |
-1 |
ahpC |
alkyl hydroperoxide reductase subunit C |
Morganella psychrotolerans |
17 |
group_2264 |
F4V73_RS16595 |
138593 |
139195 |
1 |
|
peroxiredoxin C |
Morganella psychrotolerans |
18 |
group_2264 |
PMI_RS00350 |
101402 |
102004 |
-1 |
|
peroxiredoxin C |
Proteus mirabilis HI4320 |
19 |
group_1468 |
PMI_RS05850 |
1281536 |
1282099 |
1 |
ahpC |
alkyl hydroperoxide reductase subunit C |
Proteus mirabilis HI4320 |
20 |
group_1836 |
PMI_RS07630 |
1663820 |
1664290 |
1 |
bcp |
thioredoxin-dependent thiol peroxidase |
Proteus mirabilis HI4320 |