PF00578


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00578, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00578
Description AhpC/TSA family

Occurence in the database

PF00578 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1468 FBDBKF_09420 113882 114445 1 ahpC alkyl hydroperoxide reductase subunit C Morganella morganii S1
1 group_1836 FBDBKF_13610 99732 100202 1 bcp thioredoxin-dependent thiol peroxidase Morganella morganii S1
2 group_2264 FBDBKF_17420 14864 15466 1 ahpC Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin) Morganella morganii S1
3 group_1836 EHELCC_08485 174989 175459 -1 bcp thioredoxin-dependent thiol peroxidase Morganella morganii S2
4 group_1468 EHELCC_09990 31659 32222 -1 ahpC alkyl hydroperoxide reductase subunit C Morganella morganii S2
5 group_2264 EHELCC_17315 14864 15466 1 ahpC Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin) Morganella morganii S2
6 group_1836 NLDBIP_08810 174989 175459 -1 bcp thioredoxin-dependent thiol peroxidase Morganella morganii S4
7 group_1468 NLDBIP_10335 9930 10493 -1 ahpC alkyl hydroperoxide reductase subunit C Morganella morganii S4
8 group_2264 NLDBIP_17880 27330 27932 -1 ahpC Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin) Morganella morganii S4
9 group_1836 LHKJJB_05455 81700 82170 1 bcp thioredoxin-dependent thiol peroxidase Morganella morganii S3
10 group_1468 LHKJJB_11020 181035 181598 1 ahpC alkyl hydroperoxide reductase subunit C Morganella morganii S3
11 group_2264 LHKJJB_17800 27328 27930 -1 ahpC Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin) Morganella morganii S3
12 group_1836 HKOGLL_05460 159580 160050 -1 bcp thioredoxin-dependent thiol peroxidase Morganella morganii S5
13 group_1468 HKOGLL_14080 114336 114899 1 ahpC alkyl hydroperoxide reductase subunit C Morganella morganii S5
14 group_2264 HKOGLL_17810 27328 27930 -1 ahpC Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin) Morganella morganii S5
15 group_1836 F4V73_RS03155 673850 674320 -1 bcp thioredoxin-dependent thiol peroxidase Morganella psychrotolerans
16 group_1468 F4V73_RS10545 240558 241121 -1 ahpC alkyl hydroperoxide reductase subunit C Morganella psychrotolerans
17 group_2264 F4V73_RS16595 138593 139195 1 peroxiredoxin C Morganella psychrotolerans
18 group_2264 PMI_RS00350 101402 102004 -1 peroxiredoxin C Proteus mirabilis HI4320
19 group_1468 PMI_RS05850 1281536 1282099 1 ahpC alkyl hydroperoxide reductase subunit C Proteus mirabilis HI4320
20 group_1836 PMI_RS07630 1663820 1664290 1 bcp thioredoxin-dependent thiol peroxidase Proteus mirabilis HI4320