Orthogroup:group_1874


Homologs in group_1874

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_13990 FBDBKF_13990 Morganella morganii S1 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
EHELCC_11665 EHELCC_11665 Morganella morganii S2 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
NLDBIP_12005 NLDBIP_12005 Morganella morganii S4 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
LHKJJB_11865 LHKJJB_11865 Morganella morganii S3 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
HKOGLL_10480 HKOGLL_10480 Morganella morganii S5 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
F4V73_RS12845 F4V73_RS12845 Morganella psychrotolerans rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
PMI_RS01040 PMI_RS01040 Proteus mirabilis HI4320 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD

Distribution of group_1874 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1874 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1874

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1874.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rlmD 7

Product

# Product Occurence
1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2265 7 J Translation, ribosomal structure and biogenesis (J) tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03215 7 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01938 7 TRAM domain
PF05958 7 tRNA (Uracil-5-)-methyltransferase

Annotations of the 546 SwissProt hits

Annotation Number of occurrences
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 161
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD (Fragment) 1
23S rRNA (uracil(747)-C(5))-methyltransferase 3
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 95
23S rRNA (uracil-C(5))-methyltransferase RlmCD 1
Putative 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 1
Uncharacterized RNA methyltransferase Atu0735 1
Uncharacterized RNA methyltransferase BA_0333/GBAA_0333/BAS0318 1
Uncharacterized RNA methyltransferase BA_0426/GBAA_0426/BAS0414 1
Uncharacterized RNA methyltransferase BCE_0363 1
Uncharacterized RNA methyltransferase BCE_0542 1
Uncharacterized RNA methyltransferase BC_0364 1
Uncharacterized RNA methyltransferase BH0687 1
Uncharacterized RNA methyltransferase BH0897 1
Uncharacterized RNA methyltransferase BL1394 1
Uncharacterized RNA methyltransferase BMEI1496 1
Uncharacterized RNA methyltransferase BR0438/BS1330_I0439 1
Uncharacterized RNA methyltransferase BT_0643 1
Uncharacterized RNA methyltransferase Bd2056 1
Uncharacterized RNA methyltransferase Bd3828 1
Uncharacterized RNA methyltransferase CA_C0523 1
Uncharacterized RNA methyltransferase CA_C1435 1
Uncharacterized RNA methyltransferase CCA_00883 1
Uncharacterized RNA methyltransferase CC_1326 1
Uncharacterized RNA methyltransferase CE1797 1
Uncharacterized RNA methyltransferase CPE0367 1
Uncharacterized RNA methyltransferase CPE2114 1
Uncharacterized RNA methyltransferase CPn_0885/CP_0981/CPj0885/CpB0914 1
Uncharacterized RNA methyltransferase CT0009 1
Uncharacterized RNA methyltransferase CTC_01941 1
Uncharacterized RNA methyltransferase CTC_02481 1
Uncharacterized RNA methyltransferase CT_742 1
Uncharacterized RNA methyltransferase Cgl1903/cg2084 1
Uncharacterized RNA methyltransferase DIP1398 1
Uncharacterized RNA methyltransferase DVU_0924 1
Uncharacterized RNA methyltransferase EF_0728 1
Uncharacterized RNA methyltransferase EF_2706 1
Uncharacterized RNA methyltransferase FN1713 1
Uncharacterized RNA methyltransferase GSU1452 1
Uncharacterized RNA methyltransferase GSU1748 1
Uncharacterized RNA methyltransferase LA_0098 1
Uncharacterized RNA methyltransferase LA_0292 1
Uncharacterized RNA methyltransferase LA_2977 1
Uncharacterized RNA methyltransferase LIC_10086 1
Uncharacterized RNA methyltransferase LIC_10249 1
Uncharacterized RNA methyltransferase LIC_11085 1
Uncharacterized RNA methyltransferase LJ_1606 1
Uncharacterized RNA methyltransferase LJ_1698 1
Uncharacterized RNA methyltransferase LMOf2365_1727 1
Uncharacterized RNA methyltransferase LMOf2365_1776 1
Uncharacterized RNA methyltransferase M6_Spy1070 1
Uncharacterized RNA methyltransferase M6_Spy1337 1
Uncharacterized RNA methyltransferase MMOB5020 1
Uncharacterized RNA methyltransferase MW1838 1
Uncharacterized RNA methyltransferase NE1857 1
Uncharacterized RNA methyltransferase NEQ053 1
Uncharacterized RNA methyltransferase OB0768 1
Uncharacterized RNA methyltransferase PG_1095 1
Uncharacterized RNA methyltransferase PMT_0737 1
Uncharacterized RNA methyltransferase Pro_0965 1
Uncharacterized RNA methyltransferase R00878 1
Uncharacterized RNA methyltransferase RPA0948 1
Uncharacterized RNA methyltransferase SA1713 1
Uncharacterized RNA methyltransferase SACOL1957 1
Uncharacterized RNA methyltransferase SAG0413 1
Uncharacterized RNA methyltransferase SAG0633 1
Uncharacterized RNA methyltransferase SAR1988 1
Uncharacterized RNA methyltransferase SAS1819 1
Uncharacterized RNA methyltransferase SAV1897 1
Uncharacterized RNA methyltransferase SAV_2389 1
Uncharacterized RNA methyltransferase SCO5901 1
Uncharacterized RNA methyltransferase SERP1435 1
Uncharacterized RNA methyltransferase SE_1582 1
Uncharacterized RNA methyltransferase SMU_1779c 1
Uncharacterized RNA methyltransferase SMU_788 1
Uncharacterized RNA methyltransferase SP_1029 1
Uncharacterized RNA methyltransferase SP_1901 1
Uncharacterized RNA methyltransferase SPs0562 1
Uncharacterized RNA methyltransferase SPs0836 1
Uncharacterized RNA methyltransferase SPy_1346/M5005_Spy1098 1
Uncharacterized RNA methyltransferase SPy_1606/M5005_Spy1319 1
Uncharacterized RNA methyltransferase SYNW1228 1
Uncharacterized RNA methyltransferase SpyM3_1024 1
Uncharacterized RNA methyltransferase SpyM3_1299 1
Uncharacterized RNA methyltransferase TC_0118 1
Uncharacterized RNA methyltransferase TDE_2619 1
Uncharacterized RNA methyltransferase TM_1094 1
Uncharacterized RNA methyltransferase TTE1797 1
Uncharacterized RNA methyltransferase TTE1812 1
Uncharacterized RNA methyltransferase TT_C0988 1
Uncharacterized RNA methyltransferase YfjO 1
Uncharacterized RNA methyltransferase YljE 1
Uncharacterized RNA methyltransferase YwfF 1
Uncharacterized RNA methyltransferase ZMO1179 1
Uncharacterized RNA methyltransferase alr3654 1
Uncharacterized RNA methyltransferase aq_257 1
Uncharacterized RNA methyltransferase bll2648 1
Uncharacterized RNA methyltransferase gbs0448 1
Uncharacterized RNA methyltransferase gbs0613 1
Uncharacterized RNA methyltransferase gll3134 1
Uncharacterized RNA methyltransferase lin1815 1
Uncharacterized RNA methyltransferase lin1863 1
Uncharacterized RNA methyltransferase lmo1703 1
Uncharacterized RNA methyltransferase lmo1751 1
Uncharacterized RNA methyltransferase lp_1151 1
Uncharacterized RNA methyltransferase lp_3226 1
Uncharacterized RNA methyltransferase mlr7480 1
Uncharacterized RNA methyltransferase pc0248 1
Uncharacterized RNA methyltransferase pc1544 1
Uncharacterized RNA methyltransferase pc1998 1
Uncharacterized RNA methyltransferase sll1967 1
Uncharacterized RNA methyltransferase spr0932 1
Uncharacterized RNA methyltransferase spr1717 1
Uncharacterized RNA methyltransferase spyM18_1360 1
Uncharacterized RNA methyltransferase spyM18_1615 1
Uncharacterized RNA methyltransferase tlr0942 1
tRNA (uracil(54)-C(5))-methyltransferase 5
tRNA (uracil-5-)-methyltransferase homolog A 2
tRNA/tmRNA (uracil-C(5))-methyltransferase 167

Protein length

Min length 441
Max length 460
Mean length (sd) 455.3 (8.2)
Median length 460.0

Protein length distribution